Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   AB6N81_RS04690 Genome accession   NZ_CP163559
Coordinates   957188..957763 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain B273     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 952188..962763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6N81_RS04650 (AB6N81_04645) - 952709..953647 (+) 939 WP_002446131.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  AB6N81_RS04655 (AB6N81_04650) - 953942..954499 (-) 558 WP_203162386.1 GNAT family N-acetyltransferase -
  AB6N81_RS04660 (AB6N81_04655) - 954730..954945 (+) 216 WP_001831694.1 TM2 domain-containing protein -
  AB6N81_RS04665 (AB6N81_04660) - 955048..955164 (+) 117 WP_350481929.1 SAR1012 family small protein -
  AB6N81_RS04670 (AB6N81_04665) - 955486..956016 (+) 531 WP_369352354.1 GNAT family N-acetyltransferase -
  AB6N81_RS04675 (AB6N81_04670) - 956252..956449 (+) 198 WP_002500746.1 hypothetical protein -
  AB6N81_RS04690 (AB6N81_04685) comK/comK1 957188..957763 (-) 576 WP_001829272.1 competence protein ComK Regulator
  AB6N81_RS04695 (AB6N81_04690) - 957978..958196 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  AB6N81_RS04700 (AB6N81_04695) - 958274..959260 (-) 987 WP_002458040.1 lipoate--protein ligase -
  AB6N81_RS04705 (AB6N81_04700) - 959465..959650 (+) 186 WP_001829339.1 DUF2187 family protein -
  AB6N81_RS04710 (AB6N81_04705) - 959656..960258 (+) 603 WP_002458039.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  AB6N81_RS04715 (AB6N81_04710) - 960361..961866 (-) 1506 WP_002458038.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=1030575 AB6N81_RS04690 WP_001829272.1 957188..957763(-) (comK/comK1) [Staphylococcus epidermidis strain B273]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1030575 AB6N81_RS04690 WP_001829272.1 957188..957763(-) (comK/comK1) [Staphylococcus epidermidis strain B273]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAGATTATCAGATTTGATCAAACCCGAAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAGTTTTATGGCAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATTTCTAGTAAACCACCT
ATTTTACTTACACCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCGGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGGAAGAGTAAAATAATTTTTGCGAATGGTGATTCTTTAACACTCA
ATGTATCATTTCATAGTTTGTGGCATCAATACACCAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCTATTGACTATAATCAGTCCTCCTTAAATATTTTCGAGGCGCTTTCACGCTACTCTCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743

Multiple sequence alignment