Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB6N81_RS03755 Genome accession   NZ_CP163559
Coordinates   754947..755819 (-) Length   290 a.a.
NCBI ID   WP_002487396.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain B273     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 749947..760819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6N81_RS03740 (AB6N81_03735) xerC 750249..751109 (-) 861 WP_373276798.1 tyrosine recombinase XerC -
  AB6N81_RS03745 (AB6N81_03740) trmFO 751363..752670 (-) 1308 WP_002473845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB6N81_RS03750 (AB6N81_03745) topA 752695..754764 (-) 2070 WP_369352334.1 type I DNA topoisomerase -
  AB6N81_RS03755 (AB6N81_03750) dprA 754947..755819 (-) 873 WP_002487396.1 DNA-processing protein DprA Machinery gene
  AB6N81_RS03760 (AB6N81_03755) sucD 756605..757513 (-) 909 WP_162162251.1 succinate--CoA ligase subunit alpha -
  AB6N81_RS03765 (AB6N81_03760) sucC 757535..758701 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  AB6N81_RS03770 (AB6N81_03765) - 758809..759579 (-) 771 WP_002489955.1 ribonuclease HII -
  AB6N81_RS03775 (AB6N81_03770) ylqF 759584..760447 (-) 864 WP_162159888.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33858.92 Da        Isoelectric Point: 9.7522

>NTDB_id=1030574 AB6N81_RS03755 WP_002487396.1 754947..755819(-) (dprA) [Staphylococcus epidermidis strain B273]
MIQHTMLKLYWANFTTAQLHHLTRKYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKKLKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYFLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPINKYKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILIDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1030574 AB6N81_RS03755 WP_002487396.1 754947..755819(-) (dprA) [Staphylococcus epidermidis strain B273]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACACGTAAATATCC
CGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGACTAT
GGAACAAATATGAACGTTTCAAAAAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACG
ACATATTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTCTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGTGGCGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACTTTTTACCAACTATTGGCGTACTTGGATTTGGACATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGAAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAATAAGTATAAATTTC
CTGAAAGAAACAGACTTATAAGTGGTCTGTCTAGAGGGGTTCTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATT
ACTATTGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGCAA
TTTACGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATCTTAATTGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.639

99.31

0.572
  dprA Staphylococcus aureus N315

57.639

99.31

0.572

Multiple sequence alignment