Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB6M97_RS07330 Genome accession   NZ_CP163514
Coordinates   1514647..1516449 (-) Length   600 a.a.
NCBI ID   WP_369350494.1    Uniprot ID   -
Organism   Streptococcus hillyeri strain S23-3001-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1509647..1521449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6M97_RS07320 (AB6M97_07320) - 1511099..1512451 (+) 1353 WP_121834827.1 sodium:alanine symporter family protein -
  AB6M97_RS07325 (AB6M97_07325) - 1513346..1514536 (+) 1191 WP_121834828.1 cation diffusion facilitator family transporter -
  AB6M97_RS07330 (AB6M97_07330) pepF 1514647..1516449 (-) 1803 WP_369350494.1 oligoendopeptidase F Regulator
  AB6M97_RS07335 (AB6M97_07335) trmL 1516772..1517281 (+) 510 WP_121834830.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  AB6M97_RS07340 (AB6M97_07340) - 1517698..1518267 (+) 570 WP_121834831.1 ECF transporter S component -
  AB6M97_RS07345 (AB6M97_07345) - 1518291..1518941 (+) 651 WP_121834832.1 phosphatase PAP2 family protein -
  AB6M97_RS07350 (AB6M97_07350) - 1519667..1521319 (+) 1653 WP_121834833.1 NFACT family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68808.85 Da        Isoelectric Point: 4.6062

>NTDB_id=1030356 AB6M97_RS07330 WP_369350494.1 1514647..1516449(-) (pepF) [Streptococcus hillyeri strain S23-3001-1]
MSENRSHLEEKYTWDLTTIFPTDAAWEEELASLNQDVDAAKELAGHLLDSSASLFKTTETYMGLMRRLEKLYVYASMKND
EDTTVAYYQELQAKAGALYAKLSGTFAFYEPEFMALSEEAYAEFVKETPELELYNHHFERLFKTKEHVLSQEAEELLAGA
QEIFSGASETFSVLDNADIAFPWVTNDKGEVEELTHGNYISLMESKNREVRQGAYEAMYGTYEQFQHTYAKTLQTNVKVH
NYKAKVRHFKSAREAAMSANFIPEAVYDTLLEAVNAHLPLLHRYIKLRQKVLGLDDLKMYDMYTALSEVDMAITYDEALV
KAEKVLSVLGDDYAARVKRAFTERWIDVHVNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLYTLVHETGHSMHSAYTREN
QPYVYGDYSIFLAEIASTTNENIMTEALLAEVEDDKQRFAILNHYLDGFRGTIFRQTQFAEFEHAIHVADQNGEVLTSDY
LNNLYGSLNEKYYGISAEDNPEIQYEWARIPHFYYNYYVYQYATGFAAANFLADRIVHGTQEDKDKYLDYLKAGNSDYAL
NVIAKAGVDMTKVDYLNAAFKVFEERLTELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1030356 AB6M97_RS07330 WP_369350494.1 1514647..1516449(-) (pepF) [Streptococcus hillyeri strain S23-3001-1]
ATGTCAGAAAATAGAAGTCATTTAGAGGAAAAATACACTTGGGATTTAACAACGATTTTCCCAACAGATGCCGCTTGGGA
GGAAGAATTAGCTTCCCTAAATCAAGATGTTGACGCCGCAAAAGAATTGGCTGGTCATCTTTTGGATAGTAGCGCTAGCC
TTTTTAAGACAACCGAGACCTACATGGGGTTGATGCGTCGTTTGGAAAAACTTTATGTCTATGCTTCAATGAAAAACGAT
GAGGACACAACAGTAGCTTACTATCAAGAACTTCAAGCAAAGGCTGGTGCCCTTTATGCAAAATTGAGTGGAACATTTGC
TTTCTACGAGCCAGAATTTATGGCGTTATCAGAAGAAGCATACGCTGAATTTGTCAAAGAAACTCCTGAACTTGAACTCT
ACAATCACCACTTTGAACGCCTCTTTAAGACCAAAGAACATGTTTTGTCACAAGAAGCAGAAGAATTACTTGCAGGAGCT
CAAGAAATCTTCTCAGGGGCTAGTGAGACCTTTTCTGTTCTTGACAATGCAGACATTGCTTTCCCTTGGGTGACAAATGA
TAAGGGGGAAGTAGAAGAATTGACTCATGGTAACTACATTAGCTTGATGGAGTCAAAAAATCGTGAGGTTCGTCAAGGAG
CTTATGAGGCGATGTACGGTACTTATGAGCAGTTCCAACATACTTACGCTAAGACGCTTCAAACAAACGTTAAAGTTCAC
AACTATAAGGCGAAAGTACGTCATTTCAAATCTGCTCGTGAAGCAGCTATGTCAGCCAACTTTATCCCAGAAGCAGTTTA
TGACACACTCCTTGAAGCAGTCAATGCTCACTTGCCATTGTTACATCGTTACATTAAATTACGTCAAAAAGTTCTTGGTT
TGGATGATTTGAAAATGTATGATATGTATACAGCACTTTCAGAAGTAGATATGGCTATTACATATGATGAAGCTCTAGTA
AAAGCAGAAAAAGTGTTGTCAGTTCTTGGTGATGATTATGCTGCGCGTGTGAAACGTGCCTTTACAGAGCGCTGGATTGA
TGTCCATGTGAATAAAGGAAAACGTTCAGGTGCTTACTCAGGTGGTGCCTATGACACCAATGCCTTTATGTTATTGAACT
GGCAAGATACGCTTGATAATCTCTATACACTTGTCCACGAAACTGGTCACAGTATGCATTCAGCTTATACTCGTGAAAAC
CAACCATACGTTTACGGTGATTATAGTATTTTCTTAGCAGAAATTGCGTCAACAACTAATGAAAACATCATGACAGAGGC
CTTGTTGGCAGAAGTTGAAGACGACAAACAGCGCTTTGCTATTTTGAACCATTATCTTGATGGCTTCAGAGGAACAATCT
TCCGTCAAACGCAATTCGCTGAATTTGAACATGCTATCCATGTGGCTGACCAAAATGGCGAGGTTTTAACAAGTGATTAC
CTTAATAATCTTTATGGGTCTCTTAACGAGAAATATTATGGCATATCAGCGGAAGACAATCCAGAAATTCAATACGAGTG
GGCACGTATTCCGCACTTCTACTACAATTATTATGTGTATCAATACGCAACAGGTTTTGCAGCAGCAAACTTCTTAGCAG
ACCGCATTGTGCATGGTACGCAAGAAGATAAAGACAAATACCTTGATTACCTCAAAGCAGGTAACTCAGATTACGCCCTT
AATGTCATTGCTAAAGCTGGTGTTGATATGACAAAAGTTGATTACCTCAACGCAGCCTTCAAAGTCTTTGAAGAACGTTT
GACAGAACTTGAAGCCCTAGTTGAAAAAGGTGTTCATCTATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

73.167

100

0.732

Multiple sequence alignment