Detailed information NTG1030236

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB6N03_RS08790
• Genome accession: NZ_CP163511
• Coordinates: 1823229..1824029 (+)
• Length: 266 a.a.
• NCBI ID: WP_369301248.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain 109
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1818229..1829029

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB6N03_RS08755 (AB6N03_08755)	gspH	1818382..1818897 (+)	516	WP_282279646.1	type II secretion system minor pseudopilin GspH	-
AB6N03_RS08760 (AB6N03_08760)	gspI	1818894..1819259 (+)	366	WP_032452553.1	type II secretion system minor pseudopilin GspI	-
AB6N03_RS08765 (AB6N03_08765)	gspJ	1819256..1819852 (+)	597	WP_023292022.1	type II secretion system minor pseudopilin GspJ	-
AB6N03_RS08770 (AB6N03_08770)	gspK	1819849..1820829 (+)	981	WP_077259115.1	type II secretion system minor pseudopilin GspK	-
AB6N03_RS08775 (AB6N03_08775)	gspL	1820822..1822018 (+)	1197	WP_241516161.1	type II secretion system protein GspL	-
AB6N03_RS08780 (AB6N03_08780)	-	1822011..1822496 (+)	486	WP_023292019.1	type II secretion system protein M	-
AB6N03_RS08785 (AB6N03_08785)	-	1822486..1823214 (+)	729	WP_369301246.1	type II secretion system protein N	-
AB6N03_RS08790 (AB6N03_08790)	pilD	1823229..1824029 (+)	801	WP_369301248.1	A24 family peptidase	Machinery gene
AB6N03_RS08795 (AB6N03_08795)	hrpB	1824077..1826506 (-)	2430	WP_348890327.1	ATP-dependent helicase HrpB	-
AB6N03_RS08800 (AB6N03_08800)	thpR	1826579..1827115 (+)	537	WP_023292015.1	RNA 2',3'-cyclic phosphodiesterase	-
AB6N03_RS08805 (AB6N03_08805)	sfsA	1827115..1827831 (+)	717	WP_023292014.1	DNA/RNA nuclease SfsA	-
AB6N03_RS08810 (AB6N03_08810)	dksA	1827994..1828449 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29304.85 Da
• Isoelectric Point: 8.6099

>NTDB_id=1030236 AB6N03_RS08790 WP_369301248.1 1823229..1824029(+) (pilD) [Klebsiella quasipneumoniae strain 109]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDEPITLSTPGSSCPQCRQPIAWWDNIPLLSFLWL
GRRARCCQARISWSYPLTELATGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLLASASGLAWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1030236 AB6N03_RS08790 WP_369301248.1 1823229..1824029(+) (pilD) [Klebsiella quasipneumoniae strain 109]
ATGACGACATTAGCCGCTTTATCGCTGCATTTTCCCCTTGTCTGGTATGGTTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGACCCAAACCGCGGACGACGAGCCGATAACCCTCAGCA
CGCCGGGCTCATCCTGCCCGCAGTGTCGCCAGCCGATAGCCTGGTGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCCCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCAGCGGGCTGGCGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.455	100	0.47
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.678	98.12	0.429