Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AB5S09_RS15540 | Genome accession | NZ_CP163507 |
| Coordinates | 3396384..3397178 (+) | Length | 264 a.a. |
| NCBI ID | WP_038244550.1 | Uniprot ID | A0A085U423 |
| Organism | Yersinia ruckeri strain Y2022-266 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 3391384..3402178
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB5S09_RS15505 (AB5S09_15505) | gspG | 3391603..3392070 (+) | 468 | WP_004722674.1 | type II secretion system major pseudopilin GspG | - |
| AB5S09_RS15510 (AB5S09_15510) | - | 3392115..3392669 (+) | 555 | WP_004722675.1 | GspH/FimT family pseudopilin | - |
| AB5S09_RS15515 (AB5S09_15515) | gspI | 3392666..3393028 (+) | 363 | WP_038244547.1 | type II secretion system minor pseudopilin GspI | - |
| AB5S09_RS15520 (AB5S09_15520) | gspJ | 3393025..3393630 (+) | 606 | WP_038251265.1 | type II secretion system minor pseudopilin GspJ | - |
| AB5S09_RS15525 (AB5S09_15525) | gspK | 3393620..3394705 (+) | 1086 | WP_230596563.1 | type II secretion system minor pseudopilin GspK | - |
| AB5S09_RS15530 (AB5S09_15530) | gspL | 3394707..3395906 (+) | 1200 | WP_004722681.1 | type II secretion system protein GspL | - |
| AB5S09_RS15535 (AB5S09_15535) | gspM | 3395890..3396387 (+) | 498 | WP_230596562.1 | type II secretion system protein GspM | - |
| AB5S09_RS15540 (AB5S09_15540) | pilD | 3396384..3397178 (+) | 795 | WP_038244550.1 | A24 family peptidase | Machinery gene |
| AB5S09_RS15545 (AB5S09_15545) | gspS | 3397198..3397572 (-) | 375 | WP_004722686.1 | type II secretion system pilot lipoprotein GspS | - |
| AB5S09_RS15550 (AB5S09_15550) | gbpA | 3397998..3399488 (+) | 1491 | WP_004722689.1 | N-acetylglucosamine-binding protein GbpA | - |
| AB5S09_RS15555 (AB5S09_15555) | - | 3399608..3400366 (+) | 759 | WP_230596561.1 | PepSY domain-containing protein | - |
Sequence
Protein
Download Length: 264 a.a. Molecular weight: 29761.04 Da Isoelectric Point: 8.4833
>NTDB_id=1030188 AB5S09_RS15540 WP_038244550.1 3396384..3397178(+) (pilD) [Yersinia ruckeri strain Y2022-266]
MMDALYMAQMIAPLWWGGLAVLGLCVGSFLNVAIYRLPLMLTRENPHGFNLCLPHSHCPQCKHSLKWRDNIPVFSWLFLQ
GQCRYCRASIPVRYPLVEIMTMLMTLFIAAVIPLGSPLLAALLLSWMLIALTMIDIDHLLLPDNLTLPLLWMGLLFHLFD
SRLALSEAVIGAVAGYLILWCLYWSFWLLTKREALGYGDFKLLAALGAWLGWMALPSLLLIASLCGMSFALAARLLRGRP
LNTALPFGPFLAFGGWILFLQYYR
MMDALYMAQMIAPLWWGGLAVLGLCVGSFLNVAIYRLPLMLTRENPHGFNLCLPHSHCPQCKHSLKWRDNIPVFSWLFLQ
GQCRYCRASIPVRYPLVEIMTMLMTLFIAAVIPLGSPLLAALLLSWMLIALTMIDIDHLLLPDNLTLPLLWMGLLFHLFD
SRLALSEAVIGAVAGYLILWCLYWSFWLLTKREALGYGDFKLLAALGAWLGWMALPSLLLIASLCGMSFALAARLLRGRP
LNTALPFGPFLAFGGWILFLQYYR
Nucleotide
Download Length: 795 bp
>NTDB_id=1030188 AB5S09_RS15540 WP_038244550.1 3396384..3397178(+) (pilD) [Yersinia ruckeri strain Y2022-266]
ATGATGGATGCGCTCTATATGGCTCAAATGATAGCGCCACTGTGGTGGGGCGGGCTGGCGGTTCTTGGCCTGTGTGTCGG
TAGTTTTCTCAACGTCGCTATTTATCGGCTACCGCTGATGTTAACCCGCGAAAATCCGCATGGTTTTAATCTGTGTCTAC
CTCATTCCCACTGTCCTCAGTGTAAACATTCGTTGAAATGGCGAGATAATATTCCTGTATTCAGTTGGCTATTCCTGCAA
GGACAATGTCGTTACTGTCGGGCATCTATCCCAGTGCGCTACCCGCTGGTTGAAATCATGACGATGTTGATGACCTTGTT
TATTGCTGCAGTCATCCCATTGGGCAGCCCGTTACTGGCCGCACTACTACTCAGTTGGATGCTGATCGCGTTAACCATGA
TCGATATTGACCACTTGCTCTTACCGGATAATCTGACATTGCCTCTGCTATGGATGGGGCTACTTTTTCACCTGTTTGAT
AGTCGGTTGGCATTAAGTGAGGCAGTGATTGGTGCTGTCGCAGGATATTTGATCTTATGGTGCCTTTACTGGTCGTTCTG
GCTGTTGACGAAGCGGGAAGCTCTGGGCTACGGAGACTTTAAGTTATTAGCCGCATTAGGTGCCTGGCTAGGATGGATGG
CGTTACCCTCTTTACTTTTGATCGCCTCGCTCTGCGGCATGAGTTTCGCACTGGCCGCACGTCTCCTACGGGGCAGACCA
CTGAATACGGCACTGCCATTCGGGCCGTTTCTCGCATTCGGTGGCTGGATTCTATTCCTTCAGTACTACCGTTAA
ATGATGGATGCGCTCTATATGGCTCAAATGATAGCGCCACTGTGGTGGGGCGGGCTGGCGGTTCTTGGCCTGTGTGTCGG
TAGTTTTCTCAACGTCGCTATTTATCGGCTACCGCTGATGTTAACCCGCGAAAATCCGCATGGTTTTAATCTGTGTCTAC
CTCATTCCCACTGTCCTCAGTGTAAACATTCGTTGAAATGGCGAGATAATATTCCTGTATTCAGTTGGCTATTCCTGCAA
GGACAATGTCGTTACTGTCGGGCATCTATCCCAGTGCGCTACCCGCTGGTTGAAATCATGACGATGTTGATGACCTTGTT
TATTGCTGCAGTCATCCCATTGGGCAGCCCGTTACTGGCCGCACTACTACTCAGTTGGATGCTGATCGCGTTAACCATGA
TCGATATTGACCACTTGCTCTTACCGGATAATCTGACATTGCCTCTGCTATGGATGGGGCTACTTTTTCACCTGTTTGAT
AGTCGGTTGGCATTAAGTGAGGCAGTGATTGGTGCTGTCGCAGGATATTTGATCTTATGGTGCCTTTACTGGTCGTTCTG
GCTGTTGACGAAGCGGGAAGCTCTGGGCTACGGAGACTTTAAGTTATTAGCCGCATTAGGTGCCTGGCTAGGATGGATGG
CGTTACCCTCTTTACTTTTGATCGCCTCGCTCTGCGGCATGAGTTTCGCACTGGCCGCACGTCTCCTACGGGGCAGACCA
CTGAATACGGCACTGCCATTCGGGCCGTTTCTCGCATTCGGTGGCTGGATTCTATTCCTTCAGTACTACCGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
51.181 |
96.212 |
0.492 |
| pilD | Vibrio campbellii strain DS40M4 |
46.667 |
96.591 |
0.451 |
| pilD | Neisseria gonorrhoeae MS11 |
44.531 |
96.97 |
0.432 |
| pilD | Acinetobacter baumannii D1279779 |
42.471 |
98.106 |
0.417 |
| pilD | Acinetobacter nosocomialis M2 |
42.085 |
98.106 |
0.413 |