Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   YSS_RS05635 Genome accession   NZ_CP007181
Coordinates   1081770..1082318 (+) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli RM4661     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1076770..1087318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSS_RS05610 (YSS_05780) rseP 1076880..1077986 (+) 1107 WP_025399037.1 RIP metalloprotease RseP -
  YSS_RS10275 (YSS_05785) - 1077979..1078838 (+) 860 Protein_1103 VirK family antimicrobial peptide resistance protein -
  YSS_RS05620 (YSS_05790) - 1078831..1079832 (-) 1002 WP_025399038.1 TIM barrel protein -
  YSS_RS05625 (YSS_05795) - 1079832..1081104 (-) 1273 Protein_1105 MFS transporter -
  YSS_RS05630 (YSS_05800) rpsF 1081384..1081761 (+) 378 WP_002794143.1 30S ribosomal protein S6 -
  YSS_RS05635 (YSS_05805) ssb 1081770..1082318 (+) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  YSS_RS05640 (YSS_05810) rpsR 1082329..1082589 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  YSS_RS05645 (YSS_05815) lon 1082646..1085021 (-) 2376 WP_025399040.1 endopeptidase La -
  YSS_RS05650 (YSS_05820) bamD 1085037..1085684 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  YSS_RS05655 (YSS_05825) fliW 1085848..1086237 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  YSS_RS05660 (YSS_05830) proC 1086237..1086974 (+) 738 WP_025399041.1 pyrroline-5-carboxylate reductase Machinery gene
  YSS_RS05665 (YSS_05835) ctsT 1086971..1087276 (+) 306 WP_025399042.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=102972 YSS_RS05635 WP_002777084.1 1081770..1082318(+) (ssb) [Campylobacter coli RM4661]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=102972 YSS_RS05635 WP_002777084.1 1081770..1082318(+) (ssb) [Campylobacter coli RM4661]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAATATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTATGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379

Multiple sequence alignment