Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   YSS_RS05665 Genome accession   NZ_CP007181
Coordinates   1086971..1087276 (+) Length   101 a.a.
NCBI ID   WP_025399042.1    Uniprot ID   -
Organism   Campylobacter coli RM4661     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1081971..1092276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSS_RS05640 (YSS_05810) rpsR 1082329..1082589 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  YSS_RS05645 (YSS_05815) lon 1082646..1085021 (-) 2376 WP_025399040.1 endopeptidase La -
  YSS_RS05650 (YSS_05820) bamD 1085037..1085684 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  YSS_RS05655 (YSS_05825) fliW 1085848..1086237 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  YSS_RS05660 (YSS_05830) proC 1086237..1086974 (+) 738 WP_025399041.1 pyrroline-5-carboxylate reductase Machinery gene
  YSS_RS05665 (YSS_05835) ctsT 1086971..1087276 (+) 306 WP_025399042.1 hypothetical protein Machinery gene
  YSS_RS05670 (YSS_05840) - 1087269..1087937 (+) 669 WP_025399043.1 hypothetical protein -
  YSS_RS05675 (YSS_05845) - 1087934..1088386 (+) 453 WP_002777117.1 hypothetical protein -
  YSS_RS05680 (YSS_05850) - 1088379..1089008 (-) 630 WP_025399044.1 uroporphyrinogen-III synthase -
  YSS_RS05685 (YSS_05855) thiE 1088986..1089618 (-) 633 WP_002824853.1 thiamine phosphate synthase -
  YSS_RS05690 (YSS_05860) thiD 1089608..1090420 (-) 813 WP_002824851.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  YSS_RS05695 (YSS_05865) - 1090420..1091103 (-) 684 WP_002824849.1 3-methyladenine DNA glycosylase -
  YSS_RS05700 (YSS_05870) - 1091100..1091861 (-) 762 WP_025399045.1 ATP-binding protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12308.10 Da        Isoelectric Point: 6.0617

>NTDB_id=102974 YSS_RS05665 WP_025399042.1 1086971..1087276(+) (ctsT) [Campylobacter coli RM4661]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENSANDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=102974 YSS_RS05665 WP_025399042.1 1086971..1087276(+) (ctsT) [Campylobacter coli RM4661]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTCTGCAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

47.959

97.03

0.465