Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AB5B06_RS19495 Genome accession   NZ_CP163419
Coordinates   3196180..3198618 (+) Length   812 a.a.
NCBI ID   WP_416048082.1    Uniprot ID   -
Organism   Cupriavidus basilensis strain BL-MT-10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3191180..3203618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5B06_RS19475 - 3191901..3193025 (-) 1125 WP_416048078.1 hypothetical protein -
  AB5B06_RS19480 - 3193186..3194436 (+) 1251 WP_416048079.1 lipoprotein-releasing ABC transporter permease subunit -
  AB5B06_RS19485 lolD 3194429..3195178 (+) 750 WP_416048080.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  AB5B06_RS19490 - 3195207..3196106 (+) 900 WP_416048081.1 TatD family hydrolase -
  AB5B06_RS19495 comA 3196180..3198618 (+) 2439 WP_416048082.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB5B06_RS19500 - 3198530..3199468 (-) 939 WP_416048083.1 MurR/RpiR family transcriptional regulator -
  AB5B06_RS19505 edd 3199794..3201680 (+) 1887 WP_416048084.1 phosphogluconate dehydratase -
  AB5B06_RS19510 - 3201869..3202378 (+) 510 WP_416050457.1 gluconokinase -

Sequence

Protein


Download         Length: 812 a.a.        Molecular weight: 87151.36 Da        Isoelectric Point: 10.9655

>NTDB_id=1029607 AB5B06_RS19495 WP_416048082.1 3196180..3198618(+) (comA) [Cupriavidus basilensis strain BL-MT-10]
MRLFLLAFVAGCWWLQQQGSLPRGGAVWVLAAAGLLAAALALCLRTRRPGWARVAWIVLSLLAGFGCSAWRAEARLAERL
APGLEGVDLQVSGVVAGLPAQAARGLRFVFALDDAAGMPPRVLLGWEDAPAGLRPGERYVFTVRLRQPHGLANPHGFDYE
FWLMAAGLGATGYVRDAIGEPQDAVGERLAWRIARWRAQVRDHVLQSLPPDARFAPVLAALVVGDQHGIQQRDWTLFTRT
GIGHLISISGLHITMISGLFSSFVYWLWRHSFGLGRWLPRPLPLWWPARRAALVGAVIAALVYGLLAGMQVPALRTVSML
VVAALALWSGRTPPASLVLAWAAFVAIGLDPWAVLSPGFWLSFGAVGVIFLAAAQPANQSAPTRWQRVRASLAQAARTQW
SVTIGLVPLTLLLFQQVSVISPLANAAAIPLISLLVTPMALLAAAVPAPLAGWLLGPAHLLLHWLVLGLEWLSAPPWAVW
QAARAGPVALALAVLGSLLLLAPVPCGLRARLHGVVLLLPMVLAGRQPVAHGEFRATAIDIGQGTAVLVETRSRVLLYDA
GPAYGWGAARGELGNSAGARDIVPFLRGAGVRRLDTLVISHEDADHAGGARDIMAALPVDSLLSGAPAGHRLLVPPASAA
HLEAQPCEAGQQWEWDGVRFAMLHPLPGIAQNAAIDSNARSCVLKVAGSARSLLLTGDIGRRDEAALLARLSTQDLRADF
LQVPHHGSNTSSSGAFLAVVAPEVALFQVGYRNRHRHPRPEIWDRYGSHEIARYRSDETGAVQLTTRGESYALQAYRQHA
RRYWRAAPPAPR

Nucleotide


Download         Length: 2439 bp        

>NTDB_id=1029607 AB5B06_RS19495 WP_416048082.1 3196180..3198618(+) (comA) [Cupriavidus basilensis strain BL-MT-10]
ATGCGTCTGTTTTTGCTCGCCTTCGTGGCGGGCTGCTGGTGGCTGCAGCAACAAGGCTCGCTGCCGCGTGGCGGCGCGGT
GTGGGTGTTGGCGGCTGCCGGGCTCCTGGCGGCCGCGCTCGCACTGTGCCTGCGCACGCGCCGGCCTGGCTGGGCGCGGG
TGGCCTGGATCGTGTTGTCGCTGCTGGCTGGTTTCGGCTGTTCGGCGTGGCGCGCCGAGGCTCGTCTGGCAGAGCGGCTG
GCGCCAGGGCTGGAAGGGGTCGACCTGCAGGTGAGTGGCGTGGTGGCCGGGCTGCCGGCGCAGGCCGCGCGCGGCCTGCG
CTTCGTGTTCGCGCTTGACGATGCGGCGGGCATGCCGCCCCGCGTCTTGCTGGGCTGGGAGGATGCCCCGGCCGGCTTGC
GGCCAGGCGAGCGCTACGTCTTCACCGTGCGCTTGCGGCAGCCCCATGGCCTGGCCAATCCGCATGGCTTCGATTACGAA
TTCTGGCTGATGGCGGCCGGGCTTGGCGCGACTGGGTACGTGCGCGATGCCATCGGCGAGCCGCAGGACGCTGTCGGCGA
ACGGCTCGCGTGGCGGATCGCGCGATGGCGGGCGCAGGTGCGCGATCACGTCTTGCAAAGCCTGCCACCCGATGCCCGCT
TCGCCCCGGTGCTGGCGGCCCTGGTGGTGGGCGATCAGCACGGTATCCAGCAGCGCGACTGGACCTTGTTCACACGCACC
GGCATCGGTCACCTGATCAGCATTTCCGGCCTGCATATCACCATGATTTCCGGCCTGTTCTCCAGCTTCGTCTATTGGCT
GTGGCGGCATTCGTTCGGGCTCGGGCGATGGCTGCCGCGGCCCTTGCCGCTGTGGTGGCCGGCGCGGCGCGCCGCGCTGG
TGGGCGCGGTGATCGCGGCCCTCGTCTACGGCCTGCTGGCGGGCATGCAGGTGCCGGCGCTGCGCACCGTGTCGATGCTG
GTGGTGGCGGCGCTGGCACTCTGGAGCGGGCGCACGCCGCCGGCCTCGCTGGTGCTGGCCTGGGCGGCGTTCGTGGCGAT
CGGGCTCGACCCCTGGGCGGTGCTGTCGCCCGGGTTCTGGCTTTCGTTCGGCGCGGTGGGCGTGATCTTCCTGGCCGCGG
CGCAACCGGCCAACCAGTCCGCGCCGACGCGTTGGCAGCGTGTTCGCGCCAGCCTTGCGCAGGCGGCGCGCACGCAATGG
TCCGTCACGATCGGGCTGGTGCCGCTGACCTTGCTGCTGTTCCAGCAGGTCTCGGTGATTTCGCCGCTGGCCAATGCGGC
GGCGATCCCGCTGATCAGCCTGCTGGTGACGCCCATGGCCCTGCTGGCGGCGGCGGTGCCCGCGCCGCTGGCGGGCTGGC
TGCTTGGCCCCGCGCATCTGCTGCTGCACTGGCTGGTGCTGGGCCTGGAGTGGCTGTCGGCGCCGCCGTGGGCAGTGTGG
CAGGCCGCGCGCGCCGGGCCGGTAGCGCTGGCGCTGGCGGTGCTCGGCTCGCTGCTGTTGCTGGCCCCCGTGCCCTGTGG
CTTGCGCGCGCGCCTGCATGGCGTGGTACTGCTGTTGCCGATGGTGCTGGCGGGGCGGCAGCCAGTGGCGCACGGGGAGT
TTCGCGCCACCGCGATCGATATCGGGCAGGGCACGGCGGTACTGGTGGAAACGCGCTCGCGCGTGCTGCTCTACGATGCC
GGGCCGGCTTACGGCTGGGGTGCCGCGCGTGGCGAATTGGGCAACAGCGCCGGCGCGCGGGATATCGTGCCGTTCCTGCG
CGGCGCGGGGGTGCGCAGGCTGGACACGCTGGTGATCAGCCATGAAGACGCGGACCATGCGGGCGGTGCGCGCGACATCA
TGGCGGCGCTGCCGGTGGACAGCCTGCTATCGGGCGCGCCGGCGGGACATCGGCTGCTGGTGCCGCCGGCGAGCGCTGCG
CACCTGGAGGCGCAGCCCTGCGAGGCGGGGCAGCAGTGGGAGTGGGATGGCGTGCGCTTTGCCATGCTGCATCCCTTGCC
GGGCATCGCGCAGAATGCCGCCATCGACAGCAATGCGCGCAGTTGCGTGCTCAAGGTGGCAGGCAGTGCGCGCAGCCTGC
TGCTGACCGGCGATATCGGCCGGCGCGACGAGGCGGCGCTGCTGGCACGCCTGTCCACGCAAGACTTGCGCGCGGACTTT
CTGCAGGTGCCGCATCACGGCAGCAACACCTCATCGAGCGGGGCGTTCCTGGCCGTGGTGGCGCCGGAGGTCGCGCTGTT
CCAGGTGGGCTACCGCAATCGCCACCGGCATCCCCGGCCCGAGATCTGGGATCGCTACGGTTCGCACGAGATCGCCCGCT
ATCGCAGCGACGAGACCGGCGCGGTCCAGCTTACGACGCGCGGCGAGTCTTACGCGCTGCAGGCCTACCGCCAGCACGCG
CGGCGCTACTGGCGCGCGGCGCCGCCTGCGCCTCGCTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(221-501)

Domain of unknown function (DUF4131) (DUF4131)

(27-177)

Metallo-beta-lactamase superfamily (Lactamase_B)

(542-745)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

48.994

100

0.51

Multiple sequence alignment