Detailed information NTG1029515

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4Y28_RS21030
• Genome accession: NZ_CP163387
• Coordinates: 4286029..4286829 (+)
• Length: 266 a.a.
• NCBI ID: WP_085838586.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain TY-30
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4281029..4291829

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4Y28_RS20995 (AB4Y28_20995)	gspH	4281185..4281700 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
AB4Y28_RS21000 (AB4Y28_21000)	gspI	4281697..4282062 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AB4Y28_RS21005 (AB4Y28_21005)	gspJ	4282059..4282655 (+)	597	WP_087835049.1	type II secretion system minor pseudopilin GspJ	-
AB4Y28_RS21010 (AB4Y28_21010)	gspK	4282652..4283638 (+)	987	WP_101529111.1	type II secretion system minor pseudopilin GspK	-
AB4Y28_RS21015 (AB4Y28_21015)	gspL	4283625..4284818 (+)	1194	WP_101529110.1	type II secretion system protein GspL	-
AB4Y28_RS21020 (AB4Y28_21020)	-	4284811..4285296 (+)	486	WP_004151943.1	type II secretion system protein M	-
AB4Y28_RS21025 (AB4Y28_21025)	-	4285286..4286032 (+)	747	WP_085838585.1	type II secretion system protein N	-
AB4Y28_RS21030 (AB4Y28_21030)	pilD	4286029..4286829 (+)	801	WP_085838586.1	A24 family peptidase	Machinery gene
AB4Y28_RS21035 (AB4Y28_21035)	hrpB	4286877..4289306 (-)	2430	WP_023300747.1	ATP-dependent helicase HrpB	-
AB4Y28_RS21040 (AB4Y28_21040)	thpR	4289379..4289915 (+)	537	WP_085838587.1	RNA 2',3'-cyclic phosphodiesterase	-
AB4Y28_RS21045 (AB4Y28_21045)	sfsA	4289915..4290631 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AB4Y28_RS21050 (AB4Y28_21050)	dksA	4290794..4291249 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1029515 AB4Y28_RS21030 WP_085838586.1 4286029..4286829(+) (pilD) [Klebsiella pneumoniae strain TY-30]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1029515 AB4Y28_RS21030 WP_085838586.1 4286029..4286829(+) (pilD) [Klebsiella pneumoniae strain TY-30]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGCTAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.811	99.624	0.496
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425