Detailed information NTG1029463

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: AB4670_RS01625
• Genome accession: NZ_CP163382
• Coordinates: 349961..350383 (+)
• Length: 140 a.a.
• NCBI ID: WP_272282481.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain Y03
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 344961..355383

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4670_RS01615 (AB4670_01615)	-	345330..349388 (+)	4059	WP_272282483.1	PilC/PilY family type IV pilus protein	-
AB4670_RS01620 (AB4670_01620)	-	349398..349961 (+)	564	WP_031961383.1	type IV pilin protein	-
AB4670_RS01625 (AB4670_01625)	comF	349961..350383 (+)	423	WP_272282481.1	type IV pilin protein	Machinery gene
AB4670_RS01630 (AB4670_01630)	rpsP	350531..350782 (+)	252	WP_000260334.1	30S ribosomal protein S16	-
AB4670_RS01635 (AB4670_01635)	rimM	350802..351350 (+)	549	WP_000189236.1	ribosome maturation factor RimM	-
AB4670_RS01640 (AB4670_01640)	trmD	351395..352135 (+)	741	WP_373659040.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AB4670_RS01645 (AB4670_01645)	rplS	352344..352712 (+)	369	WP_000014562.1	50S ribosomal protein L19	-
AB4670_RS01650 (AB4670_01650)	-	352765..353706 (-)	942	WP_104131029.1	triacylglycerol lipase	-
AB4670_RS01655 (AB4670_01655)	-	353821..354855 (-)	1035	WP_001189451.1	lipase secretion chaperone	-

Sequence

Protein

• Length: 140 a.a.
• Molecular weight: 15533.63 Da
• Isoelectric Point: 9.2459

>NTDB_id=1029463 AB4670_RS01625 WP_272282481.1 349961..350383(+) (comF) [Acinetobacter baumannii strain Y03]
MKKYEGFTLIELMIVVAIIAILAAIAYLSYTQYKIRTNRADVQSEMMQTAQRLQSYYVINHNYTSATLNNGLTTKDYPAS
NPIYTIALVTNSQTWTLTATPKTNTIQAGNGTVLLNSDGQKCWTKGQSCTTSTTSNWDGK

Nucleotide

• Length: 423 bp

>NTDB_id=1029463 AB4670_RS01625 WP_272282481.1 349961..350383(+) (comF) [Acinetobacter baumannii strain Y03]
ATGAAAAAATATGAAGGTTTTACCCTCATAGAGCTAATGATTGTGGTTGCTATTATTGCAATTTTGGCAGCAATTGCTTA
CCTCTCCTATACACAATATAAAATTCGGACGAATCGTGCAGATGTGCAAAGTGAAATGATGCAAACCGCACAACGTCTAC
AAAGTTACTATGTGATTAATCATAATTATACTAGTGCTACACTCAATAATGGTTTAACTACTAAAGATTATCCAGCATCC
AATCCAATTTATACTATTGCACTAGTCACAAACTCTCAAACATGGACGCTTACTGCAACTCCTAAAACAAATACGATTCA
AGCTGGAAATGGGACTGTACTTTTGAATAGTGACGGGCAGAAATGTTGGACTAAAGGTCAGTCTTGTACAACTTCAACCA
CTTCCAATTGGGATGGCAAGTAA

Domains

Predicted by InterproScan.

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (29-107)

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Acinetobacter baylyi ADP1	53.472	100	0.55
pilE	Acinetobacter baumannii D1279779	52.206	97.143	0.507
pilA2	Legionella pneumophila strain ERS1305867	38.686	97.857	0.379
pilA2	Legionella pneumophila str. Paris	38.686	97.857	0.379