Detailed information NTG1029435

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: AB4X21_RS05870
• Genome accession: NZ_CP163380
• Coordinates: 1134472..1135704 (-)
• Length: 410 a.a.
• NCBI ID: WP_003001797.1
• Uniprot ID: V8BGN3
• Organism: Streptococcus sp. CP1998
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1129472..1140704

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4X21_RS05835 (AB4X21_05835)	-	1129671..1130114 (-)	444	WP_369087631.1	hypothetical protein	-
AB4X21_RS05840 (AB4X21_05840)	-	1130267..1130710 (-)	444	WP_155171909.1	hypothetical protein	-
AB4X21_RS05845 (AB4X21_05845)	rplL	1130870..1131232 (-)	363	Protein_1099	50S ribosomal protein L7/L12	-
AB4X21_RS05850 (AB4X21_05850)	rplJ	1131288..1131803 (-)	516	WP_369087632.1	50S ribosomal protein L10	-
AB4X21_RS05855 (AB4X21_05855)	-	1132038..1132835 (-)	798	WP_369087633.1	formate/nitrite transporter family protein	-
AB4X21_RS05860 (AB4X21_05860)	-	1133003..1133707 (-)	705	WP_003001855.1	glucosaminidase domain-containing protein	-
AB4X21_RS05865 (AB4X21_05865)	yihA	1133858..1134460 (-)	603	WP_369087634.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
AB4X21_RS05870 (AB4X21_05870)	clpX	1134472..1135704 (-)	1233	WP_003001797.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AB4X21_RS05875 (AB4X21_05875)	-	1135913..1136422 (-)	510	WP_369087635.1	dihydrofolate reductase	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45663.16 Da
• Isoelectric Point: 4.3940

>NTDB_id=1029435 AB4X21_RS05870 WP_003001797.1 1134472..1135704(-) (clpX) [Streptococcus sp. CP1998]
MPTNQNNDMMVYCSFCGKSQDEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREDETDVELQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGKNNKAIDESSSYMQEIVAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDNVELEFDDEALQEIANKAIERKTGARGLRSIIEETMMDVMFEIPSQEDVKLVRITKEAVD
GTEKPILETA

Nucleotide

• Length: 1233 bp

>NTDB_id=1029435 AB4X21_RS05870 WP_003001797.1 1134472..1135704(-) (clpX) [Streptococcus sp. CP1998]
ATGCCAACGAATCAAAATAATGATATGATGGTTTATTGTTCATTTTGCGGAAAGAGTCAAGATGAAGTCCAAAAAATCAT
TGCAGGAAACAACGCGTTTATCTGTAATGAATGTGTCGAGTTAGCACAAGAAATTATCCGTGAGGAGCTAGCAGAAGAAG
TTCTTGCAGACCTTAGCGAAGTTCCAAAACCAATCGAATTGCTCAATATCTTGAACCACTATGTCATCGGTCAAGATCGT
GCCAAACGTGCTCTTGCTGTAGCGGTATACAACCACTACAAACGCATTAACTTTCACGATACTCGAGAAGACGAGACTGA
TGTTGAATTGCAAAAATCAAACATCCTCATGATTGGCCCTACTGGTTCAGGTAAGACTTTTTTGGCCCAAACCTTAGCTC
GTAGCTTGAATGTCCCATTTGCTATTGCTGATGCAACAGCCTTGACAGAAGCTGGTTATGTGGGAGAAGACGTTGAAAAC
ATTCTCTTGAAACTTCTCCAGGCAGCTGATTTCAATATTGAGCGTGCTGAACGAGGCATTATCTATGTCGATGAAATTGA
TAAGATCGCTAAGAAAAGTGAAAATGTCTCTATCACACGTGACGTTTCTGGTGAAGGAGTGCAACAAGCTCTCTTGAAGA
TCATCGAAGGAACCGTCGCTAGTGTCCCACCTCAAGGTGGACGCAAACACCCACAACAAGAGATGATTCAAGTGGATACC
AAGAATATTCTCTTCATCGTTGGTGGAGCTTTTGACGGGATCGAAGAAATTGTTAAGCAACGTCTCGGTGAAAAAGTCAT
CGGTTTCGGTAAGAACAATAAAGCCATTGATGAATCAAGCTCTTACATGCAAGAAATCGTTGCAGAAGATATTCAAAAAT
TCGGGATTATCCCAGAATTGATCGGACGTCTTCCAGTCTTTGCGGCCCTTGAGCAATTGACAGTTGACGACCTTGTCCGT
ATCTTGAAAGAGCCACGCAATGCCTTGGTAAAACAATACCAAACCTTGCTCTCTTATGATAATGTTGAATTGGAATTCGA
TGATGAAGCTCTTCAAGAGATTGCCAATAAAGCTATCGAAAGAAAAACAGGAGCTCGTGGACTTCGCTCCATTATCGAAG
AAACGATGATGGATGTCATGTTTGAAATTCCAAGTCAAGAAGATGTCAAACTTGTTCGAATTACAAAAGAAGCTGTAGAT
GGAACTGAAAAACCAATTCTCGAAACAGCCTAG

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (313-390)

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-306)

3D structure

• AlphaFold DB: V8BGN3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	86.341	100	0.863
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.711	98.049	0.566