Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   YSU_RS03565 Genome accession   NZ_CP007179
Coordinates   714235..714540 (-) Length   101 a.a.
NCBI ID   WP_002790525.1    Uniprot ID   -
Organism   Campylobacter coli RM5611     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 709235..719540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YSU_RS03530 (YSU_03600) - 709650..710411 (+) 762 WP_025431509.1 ATP-binding protein -
  YSU_RS03535 (YSU_03605) - 710408..711091 (+) 684 WP_002780240.1 3-methyladenine DNA glycosylase -
  YSU_RS03540 (YSU_03610) thiD 711091..711903 (+) 813 WP_002786353.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  YSU_RS03545 (YSU_03615) thiE 711893..712525 (+) 633 WP_002805014.1 thiamine phosphate synthase -
  YSU_RS03550 (YSU_03620) - 712503..713132 (+) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  YSU_RS03555 (YSU_03625) - 713125..713577 (-) 453 WP_002777117.1 hypothetical protein -
  YSU_RS03560 (YSU_03630) - 713574..714242 (-) 669 WP_002790524.1 hypothetical protein -
  YSU_RS03565 (YSU_03635) ctsT 714235..714540 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  YSU_RS03570 (YSU_03640) proC 714537..715274 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  YSU_RS03575 (YSU_03645) fliW 715274..715663 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  YSU_RS03580 (YSU_03650) - 715827..716474 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  YSU_RS03585 (YSU_03655) lon 716490..718865 (+) 2376 WP_002805015.1 endopeptidase La -
  YSU_RS03590 (YSU_03660) rpsR 718921..719181 (-) 261 WP_002777087.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12410.27 Da        Isoelectric Point: 6.0617

>NTDB_id=102935 YSU_RS03565 WP_002790525.1 714235..714540(-) (ctsT) [Campylobacter coli RM5611]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=102935 YSU_RS03565 WP_002790525.1 714235..714540(-) (ctsT) [Campylobacter coli RM5611]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475