Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NSQ86_RS11240 Genome accession   NZ_CP163265
Coordinates   2244675..2244974 (+) Length   99 a.a.
NCBI ID   WP_034771010.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL M8-0368     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2239675..2249974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ86_RS11210 - 2239681..2240484 (+) 804 WP_034770996.1 YqhG family protein -
  NSQ86_RS11215 - 2241023..2241193 (-) 171 WP_034770998.1 DUF2759 domain-containing protein -
  NSQ86_RS11220 - 2241264..2241506 (-) 243 WP_034771001.1 DUF2626 domain-containing protein -
  NSQ86_RS11225 - 2241645..2242346 (-) 702 WP_034771004.1 metalloregulator ArsR/SmtB family transcription factor -
  NSQ86_RS11230 comGA 2242557..2243642 (+) 1086 WP_034771006.1 competence type IV pilus ATPase ComGA Machinery gene
  NSQ86_RS11235 comGB 2243611..2244648 (+) 1038 WP_328186393.1 competence type IV pilus assembly protein ComGB -
  NSQ86_RS11240 comGC 2244675..2244974 (+) 300 WP_034771010.1 competence type IV pilus major pilin ComGC Machinery gene
  NSQ86_RS11245 comGD 2244949..2245452 (+) 504 WP_034771013.1 competence type IV pilus minor pilin ComGD -
  NSQ86_RS11250 - 2245427..2245783 (+) 357 WP_034771015.1 hypothetical protein -
  NSQ86_RS11255 comGF 2245755..2246219 (+) 465 WP_034771017.1 competence type IV pilus minor pilin ComGF -
  NSQ86_RS11260 comGG 2246275..2246640 (+) 366 WP_368996433.1 competence type IV pilus minor pilin ComGG -
  NSQ86_RS11265 - 2246720..2246926 (+) 207 WP_081912342.1 YqzE family protein -
  NSQ86_RS11270 - 2246957..2248081 (-) 1125 WP_034771027.1 hypothetical protein -
  NSQ86_RS11275 - 2248249..2249436 (-) 1188 WP_034771029.1 M14 family metallopeptidase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11080.04 Da        Isoelectric Point: 5.6913

>NTDB_id=1029148 NSQ86_RS11240 WP_034771010.1 2244675..2244974(+) (comGC) [Caldifermentibacillus hisashii strain FSL M8-0368]
MLKKESAFTLIEMMIVLFVITILLLITIPNVTKHQKNISNKGCEGLENMVQAEIQAYQIDHNKLPASIDDLKNGYLKEEP
VCPDGRKIVISNGDAVIKE

Nucleotide


Download         Length: 300 bp        

>NTDB_id=1029148 NSQ86_RS11240 WP_034771010.1 2244675..2244974(+) (comGC) [Caldifermentibacillus hisashii strain FSL M8-0368]
ATGTTGAAAAAAGAATCTGCATTTACGTTAATCGAGATGATGATCGTTCTGTTCGTCATCACTATTTTACTGCTTATAAC
CATTCCAAACGTGACAAAACACCAGAAAAATATCAGCAATAAAGGCTGTGAAGGATTAGAAAATATGGTTCAGGCAGAAA
TCCAAGCCTATCAAATAGATCATAATAAATTACCCGCTTCTATTGATGACTTGAAAAACGGTTATTTAAAAGAAGAACCG
GTATGTCCGGATGGAAGGAAGATTGTTATCTCTAATGGTGACGCAGTTATCAAAGAGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

53.684

95.96

0.515
  comGC Staphylococcus aureus MW2

46.939

98.99

0.465
  comGC Staphylococcus aureus N315

46.939

98.99

0.465

Multiple sequence alignment