Detailed information NTG1029021

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4W76_RS24585
• Genome accession: NZ_CP163256
• Coordinates: 5079891..5080691 (+)
• Length: 266 a.a.
• NCBI ID: WP_004129059.1
• Uniprot ID: A0AAD0Y356
• Organism: Klebsiella pasteurii strain strain K1134
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5074891..5085691

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4W76_RS24550 (AB4W76_24530)	gspH	5075032..5075544 (+)	513	WP_049115509.1	type II secretion system minor pseudopilin GspH	-
AB4W76_RS24555 (AB4W76_24535)	gspI	5075541..5075906 (+)	366	WP_142468515.1	type II secretion system minor pseudopilin GspI	-
AB4W76_RS24560 (AB4W76_24540)	gspJ	5075903..5076499 (+)	597	WP_049115513.1	type II secretion system minor pseudopilin GspJ	-
AB4W76_RS24565 (AB4W76_24545)	gspK	5076496..5077476 (+)	981	WP_316946321.1	type II secretion system minor pseudopilin GspK	-
AB4W76_RS24570 (AB4W76_24550)	gspL	5077469..5078665 (+)	1197	WP_142468516.1	type II secretion system protein GspL	-
AB4W76_RS24575 (AB4W76_24555)	gspM	5078658..5079143 (+)	486	WP_418611671.1	type II secretion system protein GspM	-
AB4W76_RS24580 (AB4W76_24560)	-	5079133..5079891 (+)	759	WP_112166695.1	type II secretion system protein N	-
AB4W76_RS24585 (AB4W76_24565)	pilD	5079891..5080691 (+)	801	WP_004129059.1	prepilin peptidase	Machinery gene
AB4W76_RS24590 (AB4W76_24570)	hrpB	5080789..5083218 (-)	2430	WP_418611672.1	ATP-dependent helicase HrpB	-
AB4W76_RS24595 (AB4W76_24575)	thpR	5083291..5083827 (+)	537	WP_223035396.1	RNA 2',3'-cyclic phosphodiesterase	-
AB4W76_RS24600 (AB4W76_24580)	sfsA	5083827..5084543 (+)	717	WP_004129055.1	DNA/RNA nuclease SfsA	-
AB4W76_RS24605 (AB4W76_24585)	dksA	5084708..5085163 (+)	456	WP_418611673.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29072.63 Da
• Isoelectric Point: 6.4377

>NTDB_id=1029021 AB4W76_RS24585 WP_004129059.1 5079891..5080691(+) (pilD) [Klebsiella pasteurii strain strain K1134]
MFENIALLPEFAAQYPSIWGGFLFLSGLAFGSFFNVVIHRLPLMMAHAEGINLCFPASFCPQCREPIAWRDNIPLLSFLF
LKGRSRCCGEPISPRYPLMELATGALFMLVGYLIPPGIPLLGGLLLLSVLLILATIDAQTQLLPDGLTLPLLWAGLLFNL
SDTFAPLAEAVIGAMAGYLSLWSVYWVFRLLTGKEALGYGDFKLLAALGAWLGWQALPQTLLLASASGLVWTLLQRLITR
QSFQQPLAFGPWLALAGGGIFLWSQV

Nucleotide

• Length: 801 bp

>NTDB_id=1029021 AB4W76_RS24585 WP_004129059.1 5079891..5080691(+) (pilD) [Klebsiella pasteurii strain strain K1134]
ATGTTCGAAAACATCGCGTTATTACCCGAGTTCGCCGCGCAATACCCGTCAATCTGGGGCGGCTTTTTATTCCTGTCCGG
ACTGGCGTTCGGCAGCTTTTTTAACGTCGTTATCCATCGTTTACCGCTGATGATGGCGCACGCAGAGGGAATCAATCTCT
GTTTTCCCGCGTCGTTCTGTCCGCAGTGCCGTGAGCCCATCGCCTGGCGGGACAATATCCCGCTGCTGAGCTTCCTGTTT
CTTAAGGGACGTTCGCGCTGCTGCGGGGAACCCATCTCGCCTCGTTATCCTCTGATGGAGCTGGCGACCGGCGCGCTGTT
TATGCTGGTCGGATACCTGATACCTCCGGGCATACCGCTGCTGGGCGGCTTGCTTCTGCTGTCGGTTCTACTGATTCTTG
CTACCATCGACGCGCAAACGCAGCTGCTGCCGGACGGGTTGACGCTACCGCTGCTGTGGGCCGGTCTGCTGTTCAATCTT
TCCGATACCTTCGCGCCGCTGGCGGAGGCGGTCATTGGCGCGATGGCCGGGTATTTGTCGCTGTGGTCGGTGTACTGGGT
GTTCCGTCTGCTGACCGGTAAAGAGGCGCTGGGCTACGGCGATTTCAAGCTGCTGGCGGCGCTCGGCGCGTGGCTCGGCT
GGCAGGCGCTGCCGCAGACGCTGCTGCTGGCTTCCGCCAGCGGCCTGGTCTGGACGCTGCTGCAGCGCCTGATAACCCGG
CAGTCGTTCCAGCAGCCTTTGGCCTTCGGGCCTTGGCTGGCGCTGGCGGGCGGCGGCATCTTTTTGTGGAGCCAGGTATA
A

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-111)

• Type IV leader peptidase family (Peptidase_A24) (124-232)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.897	100	0.5
pilD	Neisseria gonorrhoeae MS11	47.431	95.113	0.451
pilD	Vibrio campbellii strain DS40M4	42.909	100	0.444
pilD	Acinetobacter nosocomialis M2	44.015	97.368	0.429
pilD	Acinetobacter baumannii D1279779	43.629	97.368	0.425