Detailed information NTG1028999

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4K16_RS21255
• Genome accession: NZ_CP163251
• Coordinates: 4323676..4324476 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain TY-25
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4318676..4329476

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4K16_RS21220 (AB4K16_21220)	gspH	4318832..4319347 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
AB4K16_RS21225 (AB4K16_21225)	gspI	4319344..4319709 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AB4K16_RS21230 (AB4K16_21230)	gspJ	4319706..4320302 (+)	597	WP_025368433.1	type II secretion system minor pseudopilin GspJ	-
AB4K16_RS21235 (AB4K16_21235)	gspK	4320299..4321285 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
AB4K16_RS21240 (AB4K16_21240)	gspL	4321272..4322465 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
AB4K16_RS21245 (AB4K16_21245)	-	4322458..4322943 (+)	486	WP_025368434.1	type II secretion system protein M	-
AB4K16_RS21250 (AB4K16_21250)	-	4322933..4323679 (+)	747	WP_004145897.1	type II secretion system protein N	-
AB4K16_RS21255 (AB4K16_21255)	pilD	4323676..4324476 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AB4K16_RS21260 (AB4K16_21260)	hrpB	4324524..4326953 (-)	2430	WP_025368435.1	ATP-dependent helicase HrpB	-
AB4K16_RS21265 (AB4K16_21265)	thpR	4327026..4327562 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
AB4K16_RS21270 (AB4K16_21270)	sfsA	4327562..4328278 (+)	717	WP_025368436.1	DNA/RNA nuclease SfsA	-
AB4K16_RS21275 (AB4K16_21275)	dksA	4328441..4328896 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1028999 AB4K16_RS21255 WP_004145898.1 4323676..4324476(+) (pilD) [Klebsiella pneumoniae strain TY-25]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1028999 AB4K16_RS21255 WP_004145898.1 4323676..4324476(+) (pilD) [Klebsiella pneumoniae strain TY-25]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425