Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   LLA12_RS01650 Genome accession   NZ_LT599049
Coordinates   332504..333100 (+) Length   198 a.a.
NCBI ID   WP_003131648.1    Uniprot ID   Q9CIL6
Organism   Lactococcus lactis subsp. lactis strain A12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 327504..338100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLA12_RS01635 (LLA12_00341) ahpC 327876..328439 (+) 564 WP_003131651.1 alkyl hydroperoxide reductase subunit C -
  LLA12_RS01640 (LLA12_00342) ahpF 328505..330034 (+) 1530 WP_021722378.1 alkyl hydroperoxide reductase subunit F -
  LLA12_RS01645 (LLA12_00343) - 330200..332365 (+) 2166 WP_021722377.1 penicillin-binding transpeptidase domain-containing protein -
  LLA12_RS01650 (LLA12_00344) recR 332504..333100 (+) 597 WP_003131648.1 recombination mediator RecR Machinery gene
  LLA12_RS01655 (LLA12_00345) - 333217..334266 (+) 1050 WP_012897191.1 D-alanine--D-alanine ligase -
  LLA12_RS01660 (LLA12_00346) - 334341..335663 (+) 1323 WP_021722376.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  LLA12_RS01665 (LLA12_00347) - 335833..337485 (+) 1653 WP_021722375.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21909.22 Da        Isoelectric Point: 4.8226

>NTDB_id=1028858 LLA12_RS01650 WP_003131648.1 332504..333100(+) (recR) [Lactococcus lactis subsp. lactis strain A12]
MYYPEPIARLIESFSKLPGIGQKTATRLAFYTIGMEDQDVNEFAKNLLSAKRDLSFCSICGNLTESDPCAICTDPTRDRT
TILVVEESKDVLAMEKIREYRGLYHVLHGTISPMNGISPDEINVKTLITRLMDSEVKEVIIATNATSDGEATAMYLARMI
KPAGIKVTRLARGLAVGSDIEYADEITLSKAVENRLEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1028858 LLA12_RS01650 WP_003131648.1 332504..333100(+) (recR) [Lactococcus lactis subsp. lactis strain A12]
ATGTATTATCCTGAACCTATTGCTCGCCTGATTGAGTCGTTCTCAAAATTACCAGGGATTGGTCAAAAAACAGCGACTCG
ATTGGCTTTTTATACGATTGGCATGGAAGATCAAGATGTCAATGAATTTGCAAAAAATCTTCTGTCAGCAAAACGGGATT
TGAGTTTTTGCTCGATTTGCGGTAATTTAACAGAAAGTGATCCTTGCGCCATTTGTACCGATCCAACGCGTGATCGAACA
ACTATATTGGTCGTTGAAGAATCTAAAGATGTTCTTGCTATGGAAAAAATTCGGGAATATCGAGGACTTTATCATGTTTT
GCATGGTACGATTAGTCCAATGAATGGGATTTCTCCTGACGAAATTAATGTTAAAACATTGATTACAAGGTTAATGGATT
CAGAGGTTAAAGAAGTGATTATCGCAACTAATGCCACTTCTGACGGAGAAGCAACCGCCATGTATCTGGCTCGAATGATT
AAGCCTGCAGGAATTAAAGTGACTCGCTTGGCTCGTGGATTAGCTGTAGGATCTGATATAGAATACGCAGATGAAATTAC
TTTATCAAAAGCGGTAGAGAATCGGTTGGAAATTTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

78.283

100

0.783
  recR Bacillus subtilis subsp. subtilis str. 168

59.596

100

0.596
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485