Detailed information NTG1028457

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4O94_RS20715
• Genome accession: NZ_CP163011
• Coordinates: 4213460..4214260 (+)
• Length: 266 a.a.
• NCBI ID: WP_368996140.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain W187
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4208460..4219260

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4O94_RS20680 (AB4O94_20680)	gspH	4208613..4209128 (+)	516	WP_064158221.1	type II secretion system minor pseudopilin GspH	-
AB4O94_RS20685 (AB4O94_20685)	gspI	4209125..4209490 (+)	366	WP_032452553.1	type II secretion system minor pseudopilin GspI	-
AB4O94_RS20690 (AB4O94_20690)	gspJ	4209487..4210083 (+)	597	WP_044521061.1	type II secretion system minor pseudopilin GspJ	-
AB4O94_RS20695 (AB4O94_20695)	gspK	4210080..4211060 (+)	981	WP_368996139.1	type II secretion system minor pseudopilin GspK	-
AB4O94_RS20700 (AB4O94_20700)	gspL	4211053..4212249 (+)	1197	WP_044521060.1	type II secretion system protein GspL	-
AB4O94_RS20705 (AB4O94_20705)	-	4212242..4212727 (+)	486	WP_064158220.1	type II secretion system protein M	-
AB4O94_RS20710 (AB4O94_20710)	-	4212717..4213445 (+)	729	WP_064158219.1	type II secretion system protein N	-
AB4O94_RS20715 (AB4O94_20715)	pilD	4213460..4214260 (+)	801	WP_368996140.1	A24 family peptidase	Machinery gene
AB4O94_RS20720 (AB4O94_20720)	hrpB	4214308..4216737 (-)	2430	WP_368989060.1	ATP-dependent helicase HrpB	-
AB4O94_RS20725 (AB4O94_20725)	thpR	4216810..4217346 (+)	537	WP_023292015.1	RNA 2',3'-cyclic phosphodiesterase	-
AB4O94_RS20730 (AB4O94_20730)	sfsA	4217346..4218062 (+)	717	WP_023292014.1	DNA/RNA nuclease SfsA	-
AB4O94_RS20735 (AB4O94_20735)	dksA	4218225..4218680 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29274.82 Da
• Isoelectric Point: 8.8894

>NTDB_id=1028457 AB4O94_RS20715 WP_368996140.1 4213460..4214260(+) (pilD) [Klebsiella quasipneumoniae strain W187]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDEPITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELATGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLLASASGLAWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFIWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1028457 AB4O94_RS20715 WP_368996140.1 4213460..4214260(+) (pilD) [Klebsiella quasipneumoniae strain W187]
ATGACGACATTAGCCGCATTATCGCTGCATTTTCCCCTTGTCTGGTATGGTTTCCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGACCCAAACCGCGGACGACGAGCCGATAACCCTCAGCA
CGCCGGGCTCATCCTGCCCGCAGTGTCGCCAGCCGATAGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGCCTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCCCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGCTCGCCTCGGCCAGCGGGCTGGCGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTATCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.487	98.872	0.44
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425