Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AB4922_RS14645 Genome accession   NZ_CP162911
Coordinates   2819204..2819845 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus aerius strain KW1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2814204..2824845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4922_RS14610 (AB4922_14610) - 2815332..2815763 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  AB4922_RS14615 (AB4922_14615) - 2815763..2816104 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  AB4922_RS14620 (AB4922_14620) - 2816097..2817575 (+) 1479 WP_206115691.1 Na+/H+ antiporter subunit D -
  AB4922_RS14625 (AB4922_14625) - 2817582..2818061 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  AB4922_RS14630 (AB4922_14630) - 2818061..2818342 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  AB4922_RS14635 (AB4922_14635) mnhG 2818326..2818700 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  AB4922_RS14640 (AB4922_14640) - 2818791..2819180 (-) 390 WP_017358943.1 hotdog fold thioesterase -
  AB4922_RS14645 (AB4922_14645) comA 2819204..2819845 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  AB4922_RS14650 (AB4922_14650) comP 2819926..2822238 (-) 2313 WP_035701206.1 ATP-binding protein Regulator
  AB4922_RS14655 (AB4922_14655) comX 2822279..2822449 (-) 171 WP_074041927.1 competence pheromone ComX -
  AB4922_RS14660 (AB4922_14660) - 2822446..2823360 (-) 915 WP_065460972.1 polyprenyl synthetase family protein -
  AB4922_RS14665 (AB4922_14665) degQ 2823512..2823652 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  AB4922_RS14670 (AB4922_14670) - 2824158..2824511 (+) 354 WP_019744042.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=1028045 AB4922_RS14645 WP_007500477.1 2819204..2819845(-) (comA) [Bacillus aerius strain KW1]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1028045 AB4922_RS14645 WP_007500477.1 2819204..2819845(-) (comA) [Bacillus aerius strain KW1]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACTGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment