Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB4922_RS10975 Genome accession   NZ_CP162911
Coordinates   2151436..2153169 (-) Length   577 a.a.
NCBI ID   WP_368774520.1    Uniprot ID   A0AB39IYG4
Organism   Bacillus aerius strain KW1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2146436..2158169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4922_RS10960 (AB4922_10960) - 2147323..2148423 (-) 1101 WP_007501159.1 Rap family tetratricopeptide repeat protein -
  AB4922_RS10965 (AB4922_10965) spo0A 2148873..2149676 (-) 804 WP_008342226.1 sporulation transcription factor Spo0A Regulator
  AB4922_RS10970 (AB4922_10970) spoIVB 2149960..2151237 (-) 1278 WP_368774519.1 SpoIVB peptidase -
  AB4922_RS10975 (AB4922_10975) recN 2151436..2153169 (-) 1734 WP_368774520.1 DNA repair protein RecN Machinery gene
  AB4922_RS10980 (AB4922_10980) argR 2153204..2153653 (-) 450 WP_007501163.1 transcriptional regulator ArgR -
  AB4922_RS10985 (AB4922_10985) - 2154020..2154874 (-) 855 WP_007501164.1 TlyA family RNA methyltransferase -
  AB4922_RS10990 (AB4922_10990) dxs 2154871..2156772 (-) 1902 WP_368774521.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AB4922_RS10995 (AB4922_10995) - 2156924..2157814 (-) 891 WP_035702802.1 polyprenyl synthetase family protein -
  AB4922_RS11000 (AB4922_11000) - 2157804..2158064 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64633.53 Da        Isoelectric Point: 4.7444

>NTDB_id=1028032 AB4922_RS10975 WP_368774520.1 2151436..2153169(-) (recN) [Bacillus aerius strain KW1]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINQSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALS
QYQEAYDQYMKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNFEKIFSSLQNAYNALRNE
QGGLDWVGMASSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKFDAISRDALLEALNLSELRKKWAKKLAKHIQAELKDLYMEKSSFDTAFTI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRAKAGRTMTNVKPLSDDEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=1028032 AB4922_RS10975 WP_368774520.1 2151436..2153169(-) (recN) [Bacillus aerius strain KW1]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAGGAGTTAACGGTTTCGTTTGAAAAAGGACTCACAGTTCT
AACAGGGGAAACAGGTGCCGGAAAATCAATCATGATTGACGCTGTCTCACTTCTTGTAGGGGGAAGAGGATCATCCGAAT
TTGTCCGTTATGGCGAAAAAAAAGCAGAGCTGGAAGGTCTTTTTCTTGTACCAGCAGATCATCCTGTATTTGCCCTTTGC
GAGGAGCAAGGAATTGATGCATCTGATGAAATGATGATTCTTCGCCGTGATATCAATCAAAGCGGGAAAAGCATTTGCCG
CATTAATGGGAAGCTTGTCACCATCTCGCTTTTAAGAGAAGTTGGCCGTCTTTTGCTTGATATACATGGACAGCACGATA
ATCAGCTGTTAATGGAAGATGAAAATCATTTACATTTGCTTGATCAATTTGGAGCAGAAGAAATTGCACCTGCTCTCTCA
CAGTATCAAGAAGCGTATGATCAATATATGAAGACGGCGCAAAAACTCAAACAGCTGTCTGAAAATGAACAGGAAATGGT
TCACCGGTTAGACTTATTGCAATTTCAGCTGGAAGAGATTGAAGCGGCACAATTAGAGCCTGGGGAAGATGAGAAGCTTC
AAGAGGAACGTCATCAAATCAGCAATTTTGAAAAAATCTTTTCCTCACTTCAAAACGCATATAATGCTCTGCGTAATGAG
CAGGGAGGACTTGATTGGGTTGGGATGGCTTCAAGTGAGCTTGAGCAAGTTTCTGAGATCAACGACGATCTGAAAAAGCT
CTCTGAGCAAGTGTCAAACTCCTATTATTTATTAGAAGATTCTACTTTTCAAATGCGCAGCATGCTTGATCAATTAGAAT
TTGACCCAGCCCGTCTTGATTTCATTGAGTCTAGGCTAAATGAGATGAAGCAGCTGAAGCGAAAGTACGGCACAACCGTT
GAGGAAATTTTAGAATATGCGGCTAAGATTGAAGAGGAGATAGACCAAATCCAAAATCGAGACAGCCATTTGCAGACACT
TAAAAACAAATTTGATGCGATAAGCCGGGATGCATTGCTTGAAGCGCTTAACTTGTCAGAGCTCCGTAAAAAATGGGCGA
AAAAACTGGCGAAGCACATTCAAGCTGAATTGAAGGATTTATATATGGAGAAGTCTTCTTTTGATACCGCTTTTACGATT
CGATATGCACCATTTGGCAGTACGGACTGCCCGCTTTTAGATGGAAAACCCGTACAGCTCGGGAAAAATGGCATAGATCA
AGCGCAATTTGTCATTTCTACAAATCCGGGTGAACCAATGAAATCTTTGTCAAAAGTAGCATCTGGAGGAGAAATTTCAC
GTGTCATGCTGGCAGTGAAAAGTATTTTCTCAGCGAAACAAGAAGTGACGTCCATTATATTTGATGAAGTGGATACGGGC
GTTAGCGGCAGAGTCGCACAAGCCATTGCTGAAAAAATTTATAAAGTAGCAGCAGGCTCACAAGTACTCTGTATTACCCA
TCTGCCGCAAGTCGCAGCGATGGCTGATACACATCTTTTTATTTCTAAACGCGCTAAAGCTGGTAGAACAATGACGAACG
TCAAACCACTCAGTGATGATGAAAAAGTGAGTGAAATTGGCCGAATGATTGCTGGTGTAGAAGTCACTGAGCTCACAAAA
CAGCATGCAAAAGAATTACTGCACCAAGCAAATGATGTCAAAACGACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.39

100

0.754

Multiple sequence alignment