Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB4922_RS07745 Genome accession   NZ_CP162911
Coordinates   1518156..1519058 (+) Length   300 a.a.
NCBI ID   WP_008344822.1    Uniprot ID   A0AB39JAQ8
Organism   Bacillus aerius strain KW1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1513156..1524058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4922_RS07725 (AB4922_07725) - 1513822..1515558 (+) 1737 WP_138825735.1 glycosyltransferase -
  AB4922_RS07730 (AB4922_07730) - 1515555..1515830 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  AB4922_RS07735 (AB4922_07735) sucC 1516007..1517167 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  AB4922_RS07740 (AB4922_07740) sucD 1517190..1518092 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  AB4922_RS07745 (AB4922_07745) dprA 1518156..1519058 (+) 903 WP_008344822.1 DNA-processing protein DprA Machinery gene
  AB4922_RS07750 (AB4922_07750) topA 1519253..1521328 (+) 2076 WP_058213783.1 type I DNA topoisomerase -
  AB4922_RS07755 (AB4922_07755) trmFO 1521399..1522703 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB4922_RS07760 (AB4922_07760) xerC 1522766..1523683 (+) 918 WP_007499616.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34073.43 Da        Isoelectric Point: 8.2776

>NTDB_id=1028025 AB4922_RS07745 WP_008344822.1 1518156..1519058(+) (dprA) [Bacillus aerius strain KW1]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPTSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1028025 AB4922_RS07745 WP_008344822.1 1518156..1519058(+) (dprA) [Bacillus aerius strain KW1]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCAACCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGTTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCTTGACAAGAGGAACCATCGTGGTTCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGCGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38
  dprA Legionella pneumophila strain ERS1305867

37.049

100

0.377

Multiple sequence alignment