Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   AB4922_RS06495 Genome accession   NZ_CP162911
Coordinates   1274284..1276389 (-) Length   701 a.a.
NCBI ID   WP_368775020.1    Uniprot ID   A0AB39J5A3
Organism   Bacillus aerius strain KW1     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1269284..1281389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4922_RS06470 (AB4922_06470) - 1269525..1269767 (+) 243 WP_008346101.1 aspartyl-phosphate phosphatase Spo0E family protein -
  AB4922_RS06475 (AB4922_06475) - 1269819..1271318 (-) 1500 WP_008346092.1 ATP-binding protein -
  AB4922_RS06480 (AB4922_06480) - 1271523..1271978 (+) 456 WP_003211701.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB4922_RS06485 (AB4922_06485) motB 1272165..1272932 (-) 768 WP_019743067.1 flagellar motor protein MotB -
  AB4922_RS06490 (AB4922_06490) motA 1272925..1273719 (-) 795 WP_008346088.1 flagellar motor stator protein MotA -
  AB4922_RS06495 (AB4922_06495) clpC 1274284..1276389 (-) 2106 WP_368775020.1 AAA family ATPase Regulator
  AB4922_RS06500 (AB4922_06500) - 1276635..1277678 (+) 1044 WP_368775021.1 hypothetical protein -
  AB4922_RS06505 (AB4922_06505) queC 1277954..1278610 (+) 657 WP_008348090.1 7-cyano-7-deazaguanine synthase QueC -
  AB4922_RS06510 (AB4922_06510) queD 1278611..1279051 (+) 441 WP_148780181.1 6-carboxytetrahydropterin synthase QueD -
  AB4922_RS06515 (AB4922_06515) queE 1279044..1279775 (+) 732 WP_146270064.1 7-carboxy-7-deazaguanine synthase QueE -
  AB4922_RS06520 (AB4922_06520) queF 1279791..1280288 (+) 498 WP_003211403.1 preQ(1) synthase -
  AB4922_RS06525 (AB4922_06525) - 1280547..1280765 (+) 219 WP_017367128.1 hypothetical protein -
  AB4922_RS06530 (AB4922_06530) - 1280890..1281078 (-) 189 WP_003211747.1 DUF2187 family protein -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 78190.80 Da        Isoelectric Point: 5.1807

>NTDB_id=1028021 AB4922_RS06495 WP_368775020.1 1274284..1276389(-) (clpC) [Bacillus aerius strain KW1]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPNLFGGGSFFSEQAGHATSQERPKQKGLLDELGRN
LTDGAHAGLIDPVIGRDEEVTRVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIANGDVPNKLKNKQVYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAFEILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAQIAAEKQAALNEERYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEDIQSIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSKEAIIRLDMSEYME
KHSVSKIIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKKAVKVGFQSEQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDKDDLVKIVDLLLKDLSEQLKEQNLTVHV
TNEAKEKIAELGYHPAFGARPLRRTIQEHIEDQMTDILLEEEQLTGFTVDVEHDEIVVKKS

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=1028021 AB4922_RS06495 WP_368775020.1 1274284..1276389(-) (clpC) [Bacillus aerius strain KW1]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACGATTCGCCTGAATATGCAAGTAAATTCGTCCCGTAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAACAGTCAAAAATGAAAATGGGTCCTAACCTTTTCGGAGGCGGTTCAT
TCTTCTCTGAGCAAGCAGGACATGCGACGAGCCAAGAGCGGCCTAAACAAAAAGGCTTACTCGATGAGCTTGGCCGGAAC
TTAACGGATGGCGCACATGCTGGTTTAATCGATCCTGTCATTGGCCGTGATGAAGAAGTCACAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCTGGTGTTGGTAAAACGGCCATAGCCGAAGGACTAGCTC
TAAAAATTGCAAATGGAGATGTACCAAATAAATTAAAGAACAAACAAGTTTATTTATTAGATGTCTCTTCACTTGTGGCA
AACACAGGTGTACGTGGTCAATTTGAGGAACGGATGAAGCAATTAATCAAAGAATTGCAAAGCCGTAAAAATATCATCTT
ATTCGTTGATGAAATTCATCTTCTTGTAGGCGCAGGCTCTGCTGAAGGGTCAATGGATGCCGGAAACATTTTGAAACCAG
CTCTAGCTCGAGGGGAACTGCAGCTAGTAGGTGCGACAACATTAAAAGAATATCGTCAGATTGAAAAAGATGCTGCCCTT
GAACGCAGATTCCAACCCGTCATCGTTGATGAGCCAACACAGGATGAAGCATTCGAGATATTAAAAGGCATTCAAGATAA
ATATGAAGCGTATCATGGCGTCACCTATTCTGACGAAGCCATTAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCACTTGCCAGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAATCTCTCCATTGATGCAGCAAGT
GAAGATGAATTAACAAACCGTCTTGCGCAAATCGCCGCTGAAAAACAAGCTGCTTTAAATGAAGAACGATATGAAAAAGC
AGCGAAGCTTCGAGACGAAGAAGAAGCGATTGAAGCGAGATTGCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CTGAGGACATTCAGTCGATTGTAGAACAAAAAACAGGTATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACAAAAATG
AAAGAAATTGATGTCCGCTTAAAAGCCCGCGTCATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCCGTAAAAAG
AAGCAGAGCCGGCTTAAAATCAAAACACAGACCAACTGGCTCCTTCCTTTTCGTTGGGCCAACAGGCGTCGGGAAAACCG
AATTGTCTAAAACATTAGCGGAAGAATTATTTGGCTCAAAAGAAGCGATCATTCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCCGTGTCCAAAATCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCCGGACAGCTCACGGAAAAGGT
TCGCAGAAAACCATACAGCATCATTTTGCTCGATGAAATCGAAAAAGCGCACCCTGATGTCCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGTCTAACAGACAGTCAAGGCAGAACCGTCAGCTTTAAAGACACAGTTATCATTATGACAAGTAAC
GCTGGCAGCACAGATAAAAAAGCAGTCAAAGTCGGATTCCAGTCTGAACAAGAAGAAGCCATCGAAGAACAATCATTGAT
TGATTCACTGAGCGCTTATTTCAAACCGGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGATTCATTAGATAAAG
ACGATTTAGTCAAAATTGTGGATCTTCTGCTCAAAGATTTGTCAGAGCAGTTAAAAGAACAAAATCTAACTGTTCACGTC
ACAAACGAAGCGAAAGAAAAAATCGCTGAACTTGGTTATCATCCAGCATTTGGGGCTCGCCCGTTACGAAGAACGATTCA
AGAGCATATTGAGGATCAAATGACGGACATCTTGCTTGAAGAAGAACAACTTACTGGATTTACAGTCGATGTTGAACATG
ACGAAATTGTTGTGAAAAAGAGCTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(437-605)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA lid domain (AAA_lid_9)

(253-353)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(611-686)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

57.104

100

0.602
  clpE Streptococcus mutans UA159

56.644

100

0.602
  clpE Streptococcus pneumoniae Rx1

55.983

100

0.581
  clpE Streptococcus pneumoniae D39

55.983

100

0.581
  clpE Streptococcus pneumoniae R6

55.983

100

0.581
  clpE Streptococcus pneumoniae TIGR4

55.983

100

0.581
  clpC Bacillus subtilis subsp. subtilis str. 168

53.502

95.72

0.512
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.698

90.728

0.424
  clpC Streptococcus thermophilus LMD-9

44.272

92.154

0.408
  clpC Streptococcus thermophilus LMG 18311

44.118

92.154

0.407
  clpC Streptococcus pneumoniae TIGR4

44.322

90.442

0.401
  clpC Streptococcus pneumoniae Rx1

44.515

89.729

0.399
  clpC Streptococcus pneumoniae D39

44.515

89.729

0.399
  clpC Streptococcus mutans UA159

43.968

89.872

0.395

Multiple sequence alignment