Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   AB4L27_RS16165 Genome accession   NZ_CP162908
Coordinates   295218..296399 (-) Length   393 a.a.
NCBI ID   WP_368849296.1    Uniprot ID   -
Organism   Vibrio diabolicus strain 3098     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 290218..301399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4L27_RS16150 (AB4L27_16150) - 291448..291996 (+) 549 WP_005398196.1 GNAT family N-acetyltransferase -
  AB4L27_RS16155 (AB4L27_16155) - 292083..292700 (-) 618 WP_074190595.1 HAD family phosphatase -
  AB4L27_RS16160 (AB4L27_16160) cqsS 293068..295113 (+) 2046 WP_368849295.1 response regulator Regulator
  AB4L27_RS16165 (AB4L27_16165) cqsA 295218..296399 (-) 1182 WP_368849296.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AB4L27_RS16170 (AB4L27_16170) ylqF 296740..297684 (-) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -
  AB4L27_RS16175 (AB4L27_16175) - 298363..299517 (+) 1155 WP_368849297.1 EAL domain-containing protein -
  AB4L27_RS16180 (AB4L27_16180) - 299522..299671 (+) 150 WP_048624969.1 hypothetical protein -
  AB4L27_RS16185 (AB4L27_16185) - 299678..301039 (+) 1362 WP_368849298.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43649.92 Da        Isoelectric Point: 6.1082

>NTDB_id=1027995 AB4L27_RS16165 WP_368849296.1 295218..296399(-) (cqsA) [Vibrio diabolicus strain 3098]
MSETIQSKPLPSFIEERLDFHIQDLIEPNENKKHLVLGKRPPCNAVVMQSNDYLALSHNKEIQNAHRDAISQHDDNVVMS
AIFLQDDESKPAFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTS
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGPQGAGLLQELDLTHMVDFVTVSLAK
TFAYRAGAILGAEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIKKADDKREILFKRAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLSACQEAFVHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1027995 AB4L27_RS16165 WP_368849296.1 295218..296399(-) (cqsA) [Vibrio diabolicus strain 3098]
ATGAGTGAAACTATACAAAGCAAACCACTTCCTTCCTTTATTGAGGAACGCCTAGATTTTCATATTCAAGATCTAATTGA
ACCGAACGAGAACAAGAAACACCTTGTTCTTGGTAAACGTCCACCGTGTAATGCCGTTGTTATGCAAAGCAATGATTACC
TTGCACTGTCTCATAACAAGGAGATTCAAAACGCGCATCGTGATGCGATTTCTCAACACGATGACAACGTCGTGATGTCC
GCGATTTTCTTGCAAGATGATGAGTCGAAACCTGCATTTGAAACTCAACTAGCCAGTTTTGTCGGCATGCCTAGCTGTCT
GCTTTCTCAATCGGGATGGGCTGCGAATGTCGGTTTATTACAGACTATTTGTGCACCGAACATACCTGTGTATATAGACT
TCTTTGCGCATATGTCTTTATGGGAAGGCGCACGTATCGCAGGAGCACAAATTCATCCGTTCATGCATAACAACACCAGC
CACTTGCGAAAACAGATTTCACGCCATGGTTCGGGAATTATTGTTGTGGATTCGGTTTACAGCACTATCGGAACCATTGC
TCCTCTACGTGATATCTACGAAATAGCACAGGAGTTTGACTGCGGCTTAGTTGTGGATGAATCGCACTCGTTAGGTACGC
ACGGTCCGCAAGGCGCGGGGCTACTGCAAGAGCTAGATTTGACTCATATGGTGGATTTTGTAACCGTAAGTCTTGCAAAG
ACATTTGCTTATCGTGCTGGCGCAATTTTAGGGGCAGAAAAGCTGGCGAAGACGCTTCCATTTGTCGCGTATCCTGCCAT
TTTCAGTTCTACCGTGTTACCGCAAGAGATCATTCGGTTAGAAAAAACACTGGACGTCATAAAAAAAGCCGATGACAAGC
GGGAGATTTTGTTTAAAAGAGCGAAGTCTTTAGCCGTTGGTTTAAAACGTATTGGGTTTACTATTCGCAGTGAGTCGCAA
ATTATCGCGCTAGAATGTGGCAACGAAAGAAACACTGAGCGAGTTCGCGACTTTTTAGAAGAAAGAGATGTCTTTGGCGC
AGTTTTCTGTCGCCCTGCAACAGGAAGAAACAAGAACATCATTCGTTTTTCTGTCAATGCGGACATGACTGCCGCCGAAG
TCGATCACGTTCTTTCCGCCTGCCAAGAAGCGTTTGTTCATCCCGATCTAGAGTTTGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567

Multiple sequence alignment