Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   AB4L27_RS16160 Genome accession   NZ_CP162908
Coordinates   293068..295113 (+) Length   681 a.a.
NCBI ID   WP_368849295.1    Uniprot ID   -
Organism   Vibrio diabolicus strain 3098     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 288068..300113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4L27_RS16140 (AB4L27_16140) dcuC 288328..289695 (-) 1368 WP_256936521.1 anaerobic C4-dicarboxylate transporter DcuC -
  AB4L27_RS16145 (AB4L27_16145) - 290051..291175 (-) 1125 WP_005398197.1 fatty acid desaturase -
  AB4L27_RS16150 (AB4L27_16150) - 291448..291996 (+) 549 WP_005398196.1 GNAT family N-acetyltransferase -
  AB4L27_RS16155 (AB4L27_16155) - 292083..292700 (-) 618 WP_074190595.1 HAD family phosphatase -
  AB4L27_RS16160 (AB4L27_16160) cqsS 293068..295113 (+) 2046 WP_368849295.1 response regulator Regulator
  AB4L27_RS16165 (AB4L27_16165) cqsA 295218..296399 (-) 1182 WP_368849296.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AB4L27_RS16170 (AB4L27_16170) ylqF 296740..297684 (-) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -
  AB4L27_RS16175 (AB4L27_16175) - 298363..299517 (+) 1155 WP_368849297.1 EAL domain-containing protein -
  AB4L27_RS16180 (AB4L27_16180) - 299522..299671 (+) 150 WP_048624969.1 hypothetical protein -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 78095.61 Da        Isoelectric Point: 5.3911

>NTDB_id=1027994 AB4L27_RS16160 WP_368849295.1 293068..295113(+) (cqsS) [Vibrio diabolicus strain 3098]
MDSIRKVYQYAEPNLTLVGWMGFLGFPLYYFVWDFVFPQAYENLPLRLFCSLLFFGIIFRNRLSSTWRKYIHIYYQVTIT
ICLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWVAKGFHLDLTMDWTHVPIFLFIY
VFGNLFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPNKKEAEKDQYLMSGEDVTLLREVSEDAMN
IIQSGNETIDLLLTSIDENRVSRSSFQKHSAHSVVEKAIESFSYKRATDRFAISLDARSEFDFLGSDTLLKYVMYNLFKN
AFHHRTSEDFHIHVSMMSTEHSNQIVVTDNGAGIAPDVLRNIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIECQSQLG
EWSQFTLTFPPITSDIVTEIKNDLTKLKTILTVTNQDILVSKVTDISRFMGFESTILDVNQVLKKKEYEFEFDLIFIDLE
SLDARANQLDRLESLLSFTEARIVYLFEHHPTQRACKAAYEPIWVETQAWLLNTKPTIDRLLYDSSYVSTPTASVALDTS
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQKEDGQQALDTLEQENVDLILMDIEMPIMDGVEASRRIRSSDKNYASVPI
IAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=1027994 AB4L27_RS16160 WP_368849295.1 293068..295113(+) (cqsS) [Vibrio diabolicus strain 3098]
ATGGACTCGATACGTAAGGTTTATCAATATGCAGAACCCAACCTGACTCTCGTTGGTTGGATGGGGTTTCTTGGCTTTCC
GCTGTACTACTTTGTTTGGGATTTTGTTTTCCCACAGGCTTATGAAAACTTGCCGCTCAGATTGTTTTGTTCACTATTGT
TCTTTGGCATCATTTTTAGAAATCGCCTGTCGTCAACGTGGCGAAAATATATCCATATTTACTACCAAGTGACGATAACG
ATCTGCTTACCGTTTTTCTTTTTCTATATGTTACTGATGAATGACTGGTCCAATGTTTGGGTCATGTCCTTTATGTCCGC
GATTTTCTTGCACATTCTATTGGTTCATGTCACAAGAGTTATGTTCGCTCAAACTTTTGCCGGAATAGGTTTAGCGACGT
TCTTTGCTTGGGTGGCGAAAGGGTTTCATCTCGATTTAACAATGGACTGGACGCATGTGCCAATCTTTCTCTTTATTTAT
GTATTTGGCAATTTATTCTATTTTCGGAACCAAGTGGAGCACGAAGCGAAGGTGTCGTTGGCTAAGTCATTCGGGGCCGG
AATTGCGCATGAAATGCGTAACCCTTTAAGTGGCCTTTGCACGTCAATCGATGTTATCCAATCAGTCTTACCCAATAAAA
AAGAAGCCGAGAAAGACCAATATCTAATGAGTGGAGAGGATGTCACCCTGCTGCGCGAAGTTAGTGAGGATGCGATGAAC
ATCATCCAGTCGGGCAACGAGACGATAGATTTACTTCTGACATCGATAGACGAAAACCGTGTCTCGCGATCCAGTTTTCA
AAAGCATTCTGCTCACTCTGTGGTTGAAAAAGCGATTGAAAGCTTTAGTTATAAGCGTGCGACGGATCGCTTTGCTATAT
CCCTAGATGCGAGAAGTGAGTTTGATTTTCTTGGTAGCGATACCTTACTTAAATACGTTATGTATAACCTTTTCAAGAAC
GCCTTCCATCACCGCACATCTGAAGATTTCCACATACATGTGTCCATGATGAGTACGGAGCACTCAAACCAAATCGTTGT
AACCGATAATGGTGCTGGTATTGCTCCTGATGTCCTACGTAATATATTTCAGGACTTTTATACAACTGGTAAGTCAGGCA
GCTATGGTTTGGGTTTGCCATTTTGTAAAAAAGTGATGCGCTCTTTTGGAGGTAACATTGAATGCCAGTCTCAGCTAGGT
GAGTGGTCTCAGTTCACGTTAACTTTCCCGCCGATCACATCTGATATCGTGACTGAAATTAAAAACGATTTGACCAAACT
CAAAACCATCCTAACGGTGACTAATCAAGATATTCTTGTGTCGAAAGTGACGGACATTAGCCGTTTTATGGGTTTTGAAT
CAACGATCTTAGATGTTAATCAAGTGCTCAAAAAGAAAGAGTATGAGTTCGAATTCGACCTAATTTTTATCGACCTTGAG
AGCTTGGACGCAAGAGCAAACCAATTAGATAGATTAGAATCTCTTTTGTCCTTCACGGAAGCTCGTATCGTTTATCTTTT
TGAGCATCACCCGACACAGAGAGCATGCAAAGCGGCATATGAGCCTATTTGGGTTGAGACTCAAGCCTGGTTATTGAATA
CTAAGCCAACCATTGACCGTCTCTTGTATGATTCAAGCTATGTGTCGACACCAACGGCCTCAGTGGCTTTGGATACGTCA
AATAAGCGGACAATTATGGTCGTGGATGATAACGAATCTTTGCGAAAATTTACCGCGATGTTACTCGAAAAGCAGGGCTT
TGAAGTGATTCAGAAAGAAGACGGGCAGCAAGCACTGGATACATTAGAGCAAGAGAACGTTGACCTCATTCTTATGGATA
TCGAGATGCCCATCATGGATGGTGTAGAAGCTTCAAGGCGAATTCGAAGCTCGGATAAAAACTATGCGTCGGTACCTATT
ATTGCGCATACTGGGGATAGCTCACCTGTTACGCTGGACAAAATAGGCTCTTCTGGCATGTCTGACTTTATCGTAAAACC
AGCGGATAAAAATCGCTTATTCGACAAAATCGCAAACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(565-677)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.489

100

0.498

Multiple sequence alignment