Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   AB4L27_RS15055 Genome accession   NZ_CP162908
Coordinates   19584..20681 (+) Length   365 a.a.
NCBI ID   WP_005397733.1    Uniprot ID   A0AA92R960
Organism   Vibrio diabolicus strain 3098     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 14584..25681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4L27_RS15030 (AB4L27_15030) - 15912..17249 (-) 1338 WP_368849250.1 MATE family efflux transporter -
  AB4L27_RS15035 (AB4L27_15035) - 17371..17685 (-) 315 WP_005373603.1 DUF496 family protein -
  AB4L27_RS15040 (AB4L27_15040) - 17927..18130 (+) 204 WP_031780656.1 hypothetical protein -
  AB4L27_RS15045 (AB4L27_15045) - 18296..18946 (+) 651 WP_046875879.1 YceH family protein -
  AB4L27_RS15050 (AB4L27_15050) - 18943..19263 (+) 321 WP_193448273.1 GIY-YIG nuclease family protein -
  AB4L27_RS15055 (AB4L27_15055) luxP 19584..20681 (+) 1098 WP_005397733.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  AB4L27_RS15060 (AB4L27_15060) luxQ 20681..23257 (+) 2577 WP_368849251.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  AB4L27_RS15065 (AB4L27_15065) - 23560..24015 (+) 456 WP_368849252.1 MarR family transcriptional regulator -
  AB4L27_RS15070 (AB4L27_15070) - 24051..25109 (+) 1059 WP_145534605.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41598.94 Da        Isoelectric Point: 4.9826

>NTDB_id=1027993 AB4L27_RS15055 WP_005397733.1 19584..20681(+) (luxP) [Vibrio diabolicus strain 3098]
MKKALVFSLMSMATVAPIAQATQVLNGYWAYQEFLDQFPEQKQLTNALADAVRETPVPVERDKKRPLKISVVYPGQQISD
YWIRNIDAFEQRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEDHQPFLYVGFDHAEGSRELAVEFGKRFPKQSHYSVLYFSEGYISDIRGNTFINQVNRDNNFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGREDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=1027993 AB4L27_RS15055 WP_005397733.1 19584..20681(+) (luxP) [Vibrio diabolicus strain 3098]
ATGAAAAAAGCGTTAGTATTCTCCCTGATGTCAATGGCCACTGTCGCGCCGATAGCGCAAGCCACTCAAGTCCTCAATGG
GTATTGGGCGTATCAAGAATTTTTAGACCAGTTTCCAGAACAGAAGCAGTTAACGAATGCGTTGGCTGACGCCGTGCGAG
AGACTCCTGTTCCGGTTGAAAGAGACAAAAAGCGTCCGTTAAAAATTTCTGTGGTTTATCCAGGTCAACAGATTTCGGAT
TATTGGATTCGAAATATCGACGCATTTGAACAGCGTTTAGATAAACTCGATATCGACTATCAACTTAATCAAGTATTTAC
CCGTCCCAACGCAGATATTAAGCAACAAAGTTTGTCTTTAATGGAAGCGCTGAAGAGCAACTCCGATTATCTGATTTTCA
CTCTCGATACCACTAGGCATCGTAAGTTTGTTGAACACGTCTTAGACTCAAAGAAAACCAAGTTGATCTTACAAAATATC
ACTACACCGGTAAGAGATTGGGAGGATCACCAACCGTTCCTTTATGTTGGTTTTGATCATGCTGAAGGCAGCCGTGAGCT
TGCCGTGGAGTTTGGTAAGCGTTTTCCAAAACAGAGCCATTATAGTGTGCTCTATTTTTCAGAAGGATATATCAGCGATA
TCAGAGGTAATACCTTTATCAATCAAGTCAACCGTGATAACAACTTTGAACTACAATCTGCTTACTATACTAAAGCGACA
AAGCAGTCTGGGTATGAAGCAGCAAAAGCGAGTTTGGAAAAATACCCTGACGTCGATTTTATTTATGCGTGTTCTACAGA
TGTGGCGCTAGGGGCTGTTGATGCGCTGAAAGAATTAGGGCGTGAAGATGTCATGATCAACGGCTGGGGTGGCGGCTCTG
CAGAATTAGAAGCGCTTTCGAAAGGGGAGTTAGACGTTACTGTTATGCGTATGAACGATGATACTGGCATTGCAATGGCA
GAAGCGATTAAGTGGGATCTTGAAGGGAAACCCGTTCCAACCGTTTATTCTGGTGATTTTGAAGTCGTCACGAAATCTGA
TTCTCCAGAAAGAATTGAAGCATTAAGAAAACGCGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641

Multiple sequence alignment