Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AW03_RS16295 Genome accession   NZ_CP007173
Coordinates   3157334..3157969 (-) Length   211 a.a.
NCBI ID   WP_015384608.1    Uniprot ID   -
Organism   Bacillus subtilis HJ5     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3152334..3162969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS16275 (AW03_031260) yvzF 3153391..3153576 (-) 186 WP_003221676.1 YvzF family protein -
  AW03_RS16280 (AW03_031270) gerAA 3153694..3155142 (+) 1449 WP_015483677.1 spore germination receptor protein GerAA -
  AW03_RS16285 (AW03_031280) gerAB 3155111..3156208 (+) 1098 WP_015483678.1 spore germination receptor protein GerAB -
  AW03_RS16290 (AW03_031290) gerAC 3156205..3157326 (+) 1122 WP_015384607.1 spore germination receptor protein GerAC -
  AW03_RS16295 (AW03_031300) vraR 3157334..3157969 (-) 636 WP_015384608.1 two-component system response regulator LiaR Regulator
  AW03_RS16300 (AW03_031310) liaS 3157947..3159029 (-) 1083 WP_003244464.1 two-component system sensor histidine kinase LiaS -
  AW03_RS16305 (AW03_031320) liaF 3159026..3159751 (-) 726 WP_015384609.1 LiaRS two-component regulatory system accessory protein LiaF -
  AW03_RS16310 (AW03_031330) liaG 3159785..3160657 (-) 873 WP_015384610.1 DUF4097 domain-containing protein -
  AW03_RS16315 (AW03_031340) liaH 3160758..3161435 (-) 678 WP_003228506.1 stress responsive protein LiaH -
  AW03_RS16320 (AW03_031350) liaI 3161462..3161842 (-) 381 WP_003243447.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23096.70 Da        Isoelectric Point: 4.9049

>NTDB_id=102797 AW03_RS16295 WP_015384608.1 3157334..3157969(-) (vraR) [Bacillus subtilis HJ5]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIEATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=102797 AW03_RS16295 WP_015384608.1 3157334..3157969(-) (vraR) [Bacillus subtilis HJ5]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ATCTTGTCATGGAGGGCATGGATGGCATTGAAGCTACAAAGCAAATTTGCCGGGAGCTTTCCGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCACTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTAAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.565

100

0.408

Multiple sequence alignment