Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3Z09_RS05855 Genome accession   NZ_CP162899
Coordinates   1231534..1232115 (-) Length   193 a.a.
NCBI ID   WP_201307280.1    Uniprot ID   -
Organism   Companilactobacillus farciminis strain YLR-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1226534..1237115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Z09_RS05830 (AB3Z09_05830) rplI 1227503..1227958 (-) 456 WP_368790468.1 50S ribosomal protein L9 -
  AB3Z09_RS05835 (AB3Z09_05835) - 1227972..1229972 (-) 2001 WP_368790469.1 DHH family phosphoesterase -
  AB3Z09_RS05840 (AB3Z09_05840) - 1230129..1230662 (-) 534 WP_368790470.1 hypothetical protein -
  AB3Z09_RS05845 (AB3Z09_05845) - 1230693..1230893 (-) 201 WP_010017914.1 helix-turn-helix transcriptional regulator -
  AB3Z09_RS05850 (AB3Z09_05850) rpsR 1231276..1231512 (-) 237 WP_010017915.1 30S ribosomal protein S18 -
  AB3Z09_RS05855 (AB3Z09_05855) ssb 1231534..1232115 (-) 582 WP_201307280.1 single-stranded DNA-binding protein Machinery gene
  AB3Z09_RS05860 (AB3Z09_05860) rpsF 1232153..1232449 (-) 297 WP_010017918.1 30S ribosomal protein S6 -
  AB3Z09_RS05865 (AB3Z09_05865) gyrA 1232651..1235143 (-) 2493 WP_368790471.1 DNA gyrase subunit A -
  AB3Z09_RS05870 (AB3Z09_05870) gyrB 1235160..1237109 (-) 1950 WP_010017921.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21312.63 Da        Isoelectric Point: 4.7512

>NTDB_id=1027919 AB3Z09_RS05855 WP_201307280.1 1231534..1232115(-) (ssb) [Companilactobacillus farciminis strain YLR-1]
MINRVVLVGRLTRDPELRYTANGAAVASFTVAVNRQFTNSQGEREADFINCVIWRKAAENFSNFTNKGSLVGIDGRLQTR
NYENQQGQRVYVTEVVVENFSLLESRAESEKRNSGAGSNQAPSYNNNNNQSSQSPFGNNNNNNYGNNAGNSNFDNSNNNS
NNNNQSNNSNNNNGDPFANNSKPIDISDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=1027919 AB3Z09_RS05855 WP_201307280.1 1231534..1232115(-) (ssb) [Companilactobacillus farciminis strain YLR-1]
ATGATTAATCGAGTAGTTTTAGTTGGACGCCTGACACGTGATCCTGAATTAAGATACACTGCTAATGGAGCAGCGGTTGC
CAGTTTTACAGTTGCTGTAAACAGACAATTTACTAATTCTCAAGGTGAACGTGAAGCCGATTTTATCAATTGTGTCATTT
GGAGAAAAGCTGCCGAGAATTTTTCTAATTTCACTAATAAAGGTTCTCTTGTAGGTATTGATGGACGTCTTCAAACACGT
AACTATGAAAACCAACAAGGACAACGAGTATATGTAACAGAAGTAGTTGTAGAAAACTTCTCCTTGTTAGAATCTCGTGC
CGAAAGTGAAAAGAGAAATTCCGGTGCTGGTTCCAATCAAGCACCTAGCTATAATAACAACAACAATCAATCAAGTCAGT
CTCCATTTGGAAATAATAATAACAACAATTATGGAAATAACGCTGGCAACAGCAATTTCGATAATAGTAACAACAATTCT
AATAACAATAATCAATCTAACAATTCTAACAATAATAATGGCGATCCTTTTGCTAACAACAGCAAGCCGATTGACATTTC
TGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.212

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.513

100

0.575

Multiple sequence alignment