Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   AB4073_RS04460 Genome accession   NZ_CP162643
Coordinates   912540..917024 (+) Length   1494 a.a.
NCBI ID   WP_368678503.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 128-92     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 907540..922024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4073_RS04435 (AB4073_04435) - 907982..908620 (-) 639 WP_368678502.1 hypothetical protein -
  AB4073_RS04440 (AB4073_04440) pilG 908905..909288 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  AB4073_RS04445 (AB4073_04445) - 909312..909674 (+) 363 WP_002116220.1 PleD family two-component system response regulator -
  AB4073_RS04450 (AB4073_04450) - 909735..910271 (+) 537 WP_002116439.1 chemotaxis protein CheW -
  AB4073_RS04455 (AB4073_04455) - 910314..912392 (+) 2079 WP_061874138.1 methyl-accepting chemotaxis protein -
  AB4073_RS04460 (AB4073_04460) chpA 912540..917024 (+) 4485 WP_368678503.1 Hpt domain-containing protein Regulator
  AB4073_RS04465 (AB4073_04465) - 917024..917491 (+) 468 WP_368678504.1 hypothetical protein -
  AB4073_RS04470 (AB4073_04470) - 917694..919085 (+) 1392 WP_239936060.1 coproporphyrinogen-III oxidase family protein -
  AB4073_RS04475 (AB4073_04475) - 919094..919975 (+) 882 WP_239957611.1 alpha/beta fold hydrolase -
  AB4073_RS04480 (AB4073_04480) dapE 920114..921250 (-) 1137 WP_016143398.1 succinyl-diaminopimelate desuccinylase -
  AB4073_RS04485 (AB4073_04485) - 921376..921519 (-) 144 WP_014207555.1 entericidin A/B family lipoprotein -

Sequence


Protein


Download         Length: 1494 a.a.        Molecular weight: 170782.33 Da        Isoelectric Point: 4.4452

>NTDB_id=1027759 AB4073_RS04460 WP_368678503.1 912540..917024(+) (chpA) [Acinetobacter lactucae strain 128-92]
MKEILKTLTEAMMLPEDSYSQQDDEFLEIFVEEIEEIFVELQSLIDEWMQSESIAKLIEIRRYFHTLKGSGRMIGAKSSA
ELAWTVEDTLNRVINQSLGLTPNIQQYVQLVFKFYFFKLVDDFKSKKDHTLDFRPLILLGQQLQQQKSLEPALDELLLLS
DILTAETQIGLETHDLEPETAKVLTISTPEVAIENEQTLAETLILFMEEAEEHLATIDQFLEQEIHQHESYNALIRALHT
LRGSSAMAHVEPIFDASTKVEHLFKILLQEELSSHSEEISLLRYYREFIRNSLDLLSAHCSTEQLESDLQKFNQIWDAYM
EQHGEHSSPLMPPHGLVYQLLQLDVAELLDAELDFEKGIRTEFPHYLERLSEQADVLLQHTQSQAMVGLYEYTNQLKESY
DILLERPDLLQSDYVFEIYQKAHQQLIQLFDALAAGQRVSIIEQHQNVLEELKLYTQHIPILNIEPTFNTEVEQTTNEPL
IENVFTDQVTIGQSVQLDRQFISSEHVNRHFDPDLLDIFLEEADELLEGMDTDLNIWVKDQENFAALNNLMRYLHTLKGG
ANMIQATYIGLIAHELESIYERLIQKQLIASSALIDFIRLVQDDLADRLQIVREQHLDYAASHTIQALKNAAQTYDSFSS
TVKDEQTQTEAYVIPELNFEALQQEVINNTALSFSELTSGSEQIAESNNQLVEYAELRVLYADHDHTESVQDQDINSVVE
QTFMEEAAELLEMADHLLRQWFEQRTNRSILLQLQRAVHSLKGGSRMLGLQTVQAIAYQLENAFEQFALHHFSSNIYDNL
LESAIVWLKEAIFKQNYQHFDGLQQSLENIQFIETAIQIPSKLTRTDLFSSEPVMSFVQGDGTEPPPMMGAWEHTERLDQ
NNEMIRVSADLIEKMIDLSGENSINRSRIEMDLSQFGHTLAEMELAIQRLADQLRRMEGELETQIIAKHGIENSRYTEFD
PLEMDQYSSLNQLSKSLAESASDLVDFKNTLSEKIRDTEGLLVQQSRIQAEIQEGLMRTRLVPFSRLLPRLQRIVRQTST
ALNRPAELFVNNTEGELDRTMLERLVTPLEHMLRNAIDHGLEDRAQREQAQKPEIGRIELNIHRQGTDVVVTFKDDGQGI
DIEKVRQKALMSGLIHSEQILEHQDILQLIFHPGLSTADQVTQISGRGVGLDVVQSDIKALGGHVSVDSVYGQGTVFTIR
VPTTVAVSDALMVKVADQQFAIPLAQIDRIVRVSPASLEQYFGSAQEVFEYENKRYPLRYLSEFVGNQPIPRLSGMMYSL
PVLMIKANNGQTVALLVDQLIGSRAQIVVKPIGQQFSSIGAIAGATILGDGQVCLILDGQNIARQIQSTRRYKLLNETIY
RQRESDERRLIMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENIKPDLMLLDIEMPRMDGFEVLNLVRHHDLH
QDMPVIMITSRTGEKHRERAFALGVNQYMGKPFQEEDLLHNIDALFMTFEGGLA

Nucleotide


Download         Length: 4485 bp        

>NTDB_id=1027759 AB4073_RS04460 WP_368678503.1 912540..917024(+) (chpA) [Acinetobacter lactucae strain 128-92]
ATGAAAGAAATATTAAAAACTTTAACTGAAGCAATGATGCTACCGGAAGATAGCTATTCTCAACAAGATGATGAATTTCT
TGAAATTTTTGTCGAAGAAATTGAGGAAATTTTTGTTGAATTACAATCTTTGATTGACGAGTGGATGCAATCTGAAAGTA
TTGCTAAGCTTATCGAAATCCGCCGTTATTTTCATACATTGAAAGGTTCTGGCCGGATGATTGGTGCCAAATCATCTGCT
GAGCTTGCTTGGACTGTAGAAGATACGTTGAATCGCGTAATCAATCAGAGTCTTGGATTAACTCCTAACATCCAACAATA
TGTTCAGTTGGTATTTAAGTTCTATTTCTTTAAGTTAGTAGATGACTTCAAATCTAAAAAAGATCATACCCTAGACTTTA
GGCCCCTCATTTTATTGGGGCAACAATTACAACAACAGAAAAGTTTAGAACCCGCTTTAGACGAACTTTTATTATTATCA
GATATCCTTACTGCTGAAACTCAAATTGGTTTAGAAACACATGATTTAGAACCAGAAACAGCTAAAGTTTTAACTATATC
TACTCCAGAAGTCGCTATAGAAAATGAGCAGACCCTTGCTGAAACCTTAATTTTATTTATGGAAGAAGCAGAAGAACACT
TAGCGACGATTGATCAATTTTTAGAACAAGAAATACATCAGCATGAAAGTTATAATGCTTTAATACGTGCGTTACATACG
TTACGCGGCAGCTCGGCCATGGCGCATGTTGAACCAATCTTTGATGCTAGTACCAAGGTTGAGCATTTATTTAAAATACT
ATTACAAGAAGAGCTTTCTTCTCACTCTGAAGAAATTTCATTACTCCGTTATTATCGTGAGTTTATTCGAAATAGTTTAG
ATCTATTGTCTGCACATTGCTCTACTGAGCAATTGGAATCTGATCTACAAAAATTTAATCAGATTTGGGATGCTTATATG
GAGCAGCATGGTGAGCATTCAAGCCCACTCATGCCTCCACATGGATTAGTGTATCAGTTATTACAGCTAGATGTTGCTGA
ATTACTTGATGCGGAATTAGATTTTGAGAAGGGAATACGGACAGAGTTTCCTCATTATCTTGAACGTTTAAGTGAACAAG
CAGATGTGTTGTTGCAACACACTCAGTCGCAAGCAATGGTTGGTTTATATGAATATACTAACCAGTTGAAAGAAAGCTAT
GACATATTACTTGAACGACCTGATTTATTACAATCAGACTATGTTTTTGAAATTTATCAAAAAGCGCACCAACAATTAAT
TCAATTATTTGATGCCTTAGCTGCGGGACAAAGAGTAAGTATTATTGAGCAACACCAAAATGTCTTGGAAGAGCTAAAAC
TATATACTCAACATATTCCAATTCTTAATATTGAACCAACCTTTAATACTGAAGTTGAACAAACAACGAATGAACCTCTG
ATAGAAAATGTATTCACTGATCAGGTTACAATAGGGCAGAGTGTACAACTAGATCGACAGTTTATTTCATCTGAGCATGT
AAATCGTCATTTTGATCCAGATCTATTAGATATTTTTCTTGAAGAAGCTGATGAGTTGCTTGAAGGGATGGATACAGATC
TTAATATTTGGGTTAAAGATCAAGAAAACTTTGCCGCTCTTAATAATCTGATGCGTTATTTGCATACCTTAAAAGGTGGG
GCAAATATGATTCAGGCAACTTATATTGGTTTAATTGCACATGAATTAGAAAGTATTTATGAGCGATTAATTCAAAAACA
GTTAATAGCTTCGTCTGCTCTCATTGATTTTATTCGACTAGTTCAAGATGACTTGGCTGACCGTCTTCAAATAGTACGTG
AACAGCATCTAGATTATGCTGCTTCTCATACTATTCAAGCGCTTAAAAATGCAGCCCAGACCTATGATTCATTTAGTTCT
ACTGTTAAAGACGAGCAAACACAAACTGAAGCATATGTTATACCTGAATTAAATTTTGAAGCATTACAGCAAGAAGTAAT
AAATAATACGGCATTAAGCTTCAGTGAGTTAACTTCTGGTTCTGAGCAGATTGCCGAGTCTAATAATCAACTTGTTGAAT
ACGCTGAATTACGAGTTCTTTATGCTGATCACGATCATACAGAGAGTGTCCAAGATCAAGATATTAACTCTGTTGTCGAG
CAGACATTTATGGAGGAAGCGGCCGAACTATTAGAGATGGCCGATCACTTATTAAGACAATGGTTCGAGCAGCGTACAAA
CCGTAGTATCTTGCTTCAGCTGCAAAGGGCTGTGCACAGCTTGAAAGGTGGTTCCCGTATGTTGGGACTTCAAACCGTAC
AAGCGATTGCTTATCAGCTCGAAAACGCTTTTGAACAGTTTGCGCTTCATCATTTCAGCTCAAATATCTATGATAACTTA
TTAGAGAGTGCAATTGTCTGGTTAAAAGAGGCAATTTTTAAACAAAATTATCAACACTTCGATGGTTTACAACAAAGTCT
GGAAAATATTCAGTTCATTGAAACGGCAATTCAAATTCCTAGTAAGTTAACTAGAACGGATCTCTTTAGCTCGGAACCTG
TAATGAGTTTTGTGCAAGGTGACGGTACAGAACCACCGCCAATGATGGGCGCGTGGGAGCACACAGAACGGCTTGATCAA
AATAATGAGATGATTCGAGTTTCGGCAGATTTAATTGAAAAAATGATTGATCTGTCTGGTGAAAACTCGATTAACCGTTC
GCGAATTGAAATGGATTTAAGCCAATTTGGTCATACCTTAGCGGAAATGGAATTGGCTATTCAGCGACTTGCAGATCAGT
TACGTCGAATGGAAGGCGAATTGGAAACCCAAATTATTGCAAAACACGGTATTGAGAACTCGCGTTATACGGAATTTGAT
CCTTTAGAGATGGACCAATATTCTTCATTAAATCAGTTATCAAAATCTCTTGCCGAGTCTGCATCGGATTTAGTAGATTT
TAAAAATACATTATCTGAAAAGATCAGAGACACCGAAGGTTTATTGGTACAGCAATCGCGTATTCAGGCTGAAATTCAAG
AAGGTCTTATGCGAACACGTTTAGTACCATTCTCTCGATTGCTACCTCGTTTACAAAGAATTGTAAGGCAGACTTCTACC
GCGTTAAATCGACCAGCAGAGCTTTTCGTAAATAATACGGAAGGCGAGTTGGACCGGACAATGCTAGAGCGTTTGGTTAC
GCCACTTGAGCACATGCTTAGAAATGCAATTGACCATGGACTAGAAGATCGGGCGCAACGTGAGCAAGCGCAGAAACCTG
AAATTGGACGTATTGAACTGAATATTCATCGTCAAGGTACAGATGTTGTCGTTACATTTAAGGACGATGGACAAGGTATT
GATATCGAGAAGGTTCGTCAAAAAGCATTAATGTCTGGTTTGATTCACTCTGAACAAATATTAGAACATCAAGATATTTT
ACAGCTGATTTTCCATCCTGGTTTAAGCACAGCCGATCAAGTCACTCAGATTTCAGGTCGTGGTGTAGGACTGGATGTAG
TGCAGAGTGATATTAAGGCCTTAGGTGGCCACGTAAGTGTCGACTCTGTCTATGGGCAGGGCACTGTCTTTACCATACGT
GTTCCAACAACTGTAGCCGTTAGTGATGCCTTAATGGTTAAAGTTGCTGATCAGCAATTTGCAATTCCATTGGCTCAAAT
TGATCGAATTGTGCGGGTTTCACCAGCCTCATTAGAGCAATATTTCGGAAGTGCACAAGAAGTCTTTGAATATGAAAATA
AGCGCTATCCATTACGTTATTTATCTGAGTTTGTTGGTAATCAACCAATTCCGCGCTTAAGTGGAATGATGTATTCATTA
CCAGTATTAATGATTAAGGCAAATAATGGACAAACCGTCGCATTATTAGTTGACCAACTGATTGGCTCGCGCGCACAGAT
TGTAGTTAAACCAATTGGACAACAATTTTCTAGCATTGGTGCGATTGCAGGAGCAACTATTTTAGGTGATGGTCAAGTTT
GCTTAATTTTAGATGGACAAAATATTGCTCGCCAAATTCAGTCTACTCGTCGATATAAGCTGCTTAATGAAACTATCTAT
AGACAACGCGAGTCTGACGAACGACGTCTTATCATGATTGTAGATGACTCGGTAACTGTACGTAAGGTGACGTCTCGCTT
ACTTGAACGTCAGGGCTATGATGTAGTCACAGCTAAAGATGGGGTCGATGCAATTGAACAGTTGGAAAATATTAAACCAG
ATCTCATGTTACTTGATATTGAAATGCCGCGAATGGATGGCTTTGAGGTGCTTAACCTCGTTCGACATCATGATCTACAC
CAAGATATGCCAGTGATTATGATTACATCACGAACTGGTGAAAAACACCGTGAACGAGCATTTGCTTTAGGTGTTAACCA
GTACATGGGTAAACCTTTCCAAGAAGAAGACTTACTTCACAATATTGATGCCTTATTCATGACATTTGAAGGGGGACTTG
CCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

79.748

100

0.804


Multiple sequence alignment