Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AB4073_RS02965 Genome accession   NZ_CP162643
Coordinates   628394..629023 (-) Length   209 a.a.
NCBI ID   WP_368678397.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 128-92     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 623394..634023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4073_RS02930 (AB4073_02930) mlaE 623724..624500 (+) 777 WP_368678395.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  AB4073_RS02935 (AB4073_02935) - 624500..625183 (+) 684 WP_016143580.1 outer membrane lipid asymmetry maintenance protein MlaD -
  AB4073_RS02940 (AB4073_02940) - 625210..625851 (+) 642 WP_031949443.1 phospholipid-binding protein MlaC -
  AB4073_RS02945 (AB4073_02945) - 625863..626150 (+) 288 WP_031949442.1 lipid asymmetry maintenance protein MlaB -
  AB4073_RS02950 (AB4073_02950) - 626223..627236 (-) 1014 WP_031949440.1 magnesium and cobalt transport protein CorA -
  AB4073_RS02955 (AB4073_02955) - 627395..627976 (+) 582 WP_368678396.1 TIGR00730 family Rossman fold protein -
  AB4073_RS02960 (AB4073_02960) - 627991..628392 (+) 402 WP_087089505.1 NUDIX domain-containing protein -
  AB4073_RS02965 (AB4073_02965) comF 628394..629023 (-) 630 WP_368678397.1 ComF family protein Machinery gene
  AB4073_RS02970 (AB4073_02970) recG 629016..631061 (-) 2046 WP_062850174.1 ATP-dependent DNA helicase RecG -
  AB4073_RS02975 (AB4073_02975) - 631082..631897 (+) 816 WP_368678398.1 NAD-dependent epimerase/dehydratase family protein -
  AB4073_RS02980 (AB4073_02980) - 631977..632960 (+) 984 WP_082183846.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24476.62 Da        Isoelectric Point: 9.7580

>NTDB_id=1027755 AB4073_RS02965 WP_368678397.1 628394..629023(-) (comF) [Acinetobacter lactucae strain 128-92]
MFSFLNFQHLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACDYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKHLKISVWQPIQRLNEHSQKGLSRLERFENIEQQFLPY
HHEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1027755 AB4073_RS02965 WP_368678397.1 628394..629023(-) (comF) [Acinetobacter lactucae strain 128-92]
ATGTTTAGTTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGCTAGGCATGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTTCTTG
TGGCCTGTGACTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAAATCTTA
TTAGGGGAAATTTTAAAACAATTAAAATTTCCTAAAGTACAAGCTATTGTACCCATGCCTATTTCCAATCAGCGTTTAAT
TGAACGTGGTTTCAATCAGTCATTATTACTTGCCAATATCTTAAGTAAACACTTAAAAATATCTGTTTGGCAACCGATTC
AACGTTTAAACGAGCACTCTCAAAAAGGACTTTCTCGACTAGAGCGCTTTGAAAATATCGAACAACAATTTTTACCCTAT
CATCATGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACTACAGGAAGCTCTGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCAACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(160-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

83.732

100

0.837
  comF Acinetobacter baumannii D1279779

82.775

100

0.828

Multiple sequence alignment