Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | AB4073_RS02585 | Genome accession | NZ_CP162643 |
| Coordinates | 550801..551274 (+) | Length | 157 a.a. |
| NCBI ID | WP_368678364.1 | Uniprot ID | - |
| Organism | Acinetobacter lactucae strain 128-92 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 545801..556274
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB4073_RS02560 (AB4073_02560) | - | 546262..548367 (-) | 2106 | WP_174748975.1 | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | - |
| AB4073_RS02565 (AB4073_02565) | - | 548383..548538 (-) | 156 | WP_014207816.1 | hypothetical protein | - |
| AB4073_RS02570 (AB4073_02570) | rpoZ | 548577..548855 (-) | 279 | WP_002116990.1 | DNA-directed RNA polymerase subunit omega | - |
| AB4073_RS02575 (AB4073_02575) | gmk | 548928..549557 (-) | 630 | WP_002116973.1 | guanylate kinase | - |
| AB4073_RS02580 (AB4073_02580) | ispH | 549680..550630 (+) | 951 | WP_016142896.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| AB4073_RS02585 (AB4073_02585) | fimU | 550801..551274 (+) | 474 | WP_368678364.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| AB4073_RS02590 (AB4073_02590) | pilV | 551268..551828 (+) | 561 | WP_079748555.1 | type IV pilus modification protein PilV | Machinery gene |
| AB4073_RS02595 (AB4073_02595) | pilW | 551828..552829 (+) | 1002 | WP_368678365.1 | PilW family protein | Machinery gene |
| AB4073_RS02600 (AB4073_02600) | pilX | 552826..553635 (+) | 810 | WP_081172672.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16942.54 Da Isoelectric Point: 8.5281
>NTDB_id=1027748 AB4073_RS02585 WP_368678364.1 550801..551274(+) (fimU) [Acinetobacter lactucae strain 128-92]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDENQRDLINTLSEAKTQAILGRQDVSINLNSIASNTPT
SFNWKAASNSTLELKNIAANGTQSSSTATTLTFNANGVVTNITQDTFLSICNSKTNKKKILILTKLGTLIFKAEETC
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDENQRDLINTLSEAKTQAILGRQDVSINLNSIASNTPT
SFNWKAASNSTLELKNIAANGTQSSSTATTLTFNANGVVTNITQDTFLSICNSKTNKKKILILTKLGTLIFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=1027748 AB4073_RS02585 WP_368678364.1 550801..551274(+) (fimU) [Acinetobacter lactucae strain 128-92]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTAGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCCGCGCCATCTATGTCGAATTTATTAGAAAGCAAACGATTAGATGAAAATCAACGAGACCTGATCAATACTTTGT
CGGAAGCAAAGACTCAAGCGATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAATAGCCTCAAATACACCAACT
TCTTTTAATTGGAAAGCTGCTTCCAATAGCACTCTTGAGCTTAAAAATATCGCTGCTAACGGTACACAGAGCTCATCAAC
AGCGACGACTTTAACTTTTAATGCAAATGGAGTGGTAACTAATATTACCCAAGATACATTTTTATCTATTTGTAATTCAA
AAACAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGCTAA
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTAGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCCGCGCCATCTATGTCGAATTTATTAGAAAGCAAACGATTAGATGAAAATCAACGAGACCTGATCAATACTTTGT
CGGAAGCAAAGACTCAAGCGATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAATAGCCTCAAATACACCAACT
TCTTTTAATTGGAAAGCTGCTTCCAATAGCACTCTTGAGCTTAAAAATATCGCTGCTAACGGTACACAGAGCTCATCAAC
AGCGACGACTTTAACTTTTAATGCAAATGGAGTGGTAACTAATATTACCCAAGATACATTTTTATCTATTTGTAATTCAA
AAACAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
85.987 |
100 |
0.86 |