Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   AB3456_RS09685 Genome accession   NZ_CP162632
Coordinates   2009451..2010014 (-) Length   187 a.a.
NCBI ID   WP_017722273.1    Uniprot ID   A0A2T4PJ80
Organism   Staphylococcus pseudoxylosus strain Hao 2022     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2004451..2015014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3456_RS09650 (AB3456_09650) - 2004506..2005444 (+) 939 WP_017724093.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  AB3456_RS09655 (AB3456_09655) - 2005521..2006090 (-) 570 WP_107551847.1 GNAT family N-acetyltransferase -
  AB3456_RS09660 (AB3456_09660) - 2006271..2006483 (+) 213 WP_017724091.1 TM2 domain-containing protein -
  AB3456_RS09665 (AB3456_09665) - 2007669..2007851 (-) 183 WP_017724089.1 CsbD family protein -
  AB3456_RS09670 (AB3456_09670) - 2007992..2008129 (-) 138 WP_017724088.1 beta-class phenol-soluble modulin -
  AB3456_RS09685 (AB3456_09685) comK/comK1 2009451..2010014 (-) 564 WP_017722273.1 competence protein ComK Regulator
  AB3456_RS09690 (AB3456_09690) - 2010267..2010485 (+) 219 WP_017722274.1 IDEAL domain-containing protein -
  AB3456_RS09695 (AB3456_09695) - 2010585..2011571 (-) 987 WP_119604106.1 lipoate--protein ligase -
  AB3456_RS09700 (AB3456_09700) - 2011771..2011956 (+) 186 WP_002483735.1 DUF2187 family protein -
  AB3456_RS09705 (AB3456_09705) - 2011962..2012564 (+) 603 WP_017722276.1 CPBP family glutamic-type intramembrane protease -
  AB3456_RS09710 (AB3456_09710) - 2012634..2014142 (-) 1509 WP_017722277.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21879.23 Da        Isoelectric Point: 9.5361

>NTDB_id=1027729 AB3456_RS09685 WP_017722273.1 2009451..2010014(-) (comK/comK1) [Staphylococcus pseudoxylosus strain Hao 2022]
MIQPYIIKKGDMVLQPCNLATGQYEGSYLLRYKADSQIIKERVSKIIDRSCRFYGSSYVFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKADNTWINIHYVHNIRPLKEKKCKVTFVDNQSIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PDSPIDYTKPQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=1027729 AB3456_RS09685 WP_017722273.1 2009451..2010014(-) (comK/comK1) [Staphylococcus pseudoxylosus strain Hao 2022]
ATGATTCAACCCTATATTATTAAAAAAGGTGATATGGTTTTACAACCATGTAATTTAGCTACTGGACAATATGAAGGTAG
TTACTTGTTAAGGTATAAAGCCGACAGTCAAATTATTAAAGAACGTGTGTCTAAAATTATCGACCGTTCTTGTAGATTTT
ATGGTAGCAGTTATGTATTTAAAAAGGAAGATACTATGCGTATTACCGGCATAAGTAGCAAACCACCCATTCTATTCACT
CCATTATTTCCCACTTATTTCTTTCCCACACACTCTGATCGTAAAGCAGACAATACCTGGATTAATATCCATTACGTACA
TAATATTAGACCGCTAAAAGAAAAGAAATGTAAGGTTACTTTTGTAGATAATCAAAGTATTGTAGCTAATATTTCTGCTC
ATAGTATGCATCACCAATATTTAAATGGTATATATTATTATTACATGATGGATAGGGCGGCTAGAGTTGCTACATTTGAT
CCTGATTCGCCTATTGATTATACTAAACCACAATTAAATATATATGAAGCATTGGCAAAATATTCGTTATTTGAATCGAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4PJ80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

55.738

97.861

0.545
  comK/comK1 Staphylococcus aureus N315

55.738

97.861

0.545

Multiple sequence alignment