Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   AB3456_RS00185 Genome accession   NZ_CP162632
Coordinates   46498..47847 (-) Length   449 a.a.
NCBI ID   WP_368679775.1    Uniprot ID   -
Organism   Staphylococcus pseudoxylosus strain Hao 2022     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 41498..52847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3456_RS00160 (AB3456_00160) - 42835..43082 (-) 248 Protein_29 JAB domain-containing protein -
  AB3456_RS00165 (AB3456_00165) - 43110..43616 (-) 507 WP_358246518.1 DUF1643 domain-containing protein -
  AB3456_RS00170 (AB3456_00170) - 43632..43943 (-) 312 WP_358246519.1 DUF960 family protein -
  AB3456_RS00175 (AB3456_00175) - 44037..44378 (-) 342 WP_325970504.1 SAUGI family uracil-DNA glycosylase inhibitor -
  AB3456_RS00180 (AB3456_00180) ccrB 44850..46478 (-) 1629 WP_358246520.1 cassette chromosome recombinase CcrB Machinery gene
  AB3456_RS00185 (AB3456_00185) ccrA 46498..47847 (-) 1350 WP_368679775.1 cassette chromosome recombinase CcrA Machinery gene
  AB3456_RS00190 (AB3456_00190) - 48018..48281 (-) 264 WP_119646829.1 hypothetical protein -
  AB3456_RS00195 (AB3456_00195) cch1 48347..50137 (-) 1791 WP_358246521.1 cassette chromosome replicative helicase -
  AB3456_RS00200 (AB3456_00200) - 50137..50286 (-) 150 WP_180937095.1 hypothetical protein -
  AB3456_RS00205 (AB3456_00205) - 50469..51461 (-) 993 WP_368679776.1 hypothetical protein -
  AB3456_RS00210 (AB3456_00210) - 51657..52223 (+) 567 WP_101457590.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52050.98 Da        Isoelectric Point: 10.1862

>NTDB_id=1027706 AB3456_RS00185 WP_368679775.1 46498..47847(-) (ccrA) [Staphylococcus pseudoxylosus strain Hao 2022]
MKQAIGYLRQSTTKQQSLTAQKQTIEALSEKYSIKHITFYSDKQSGRTDKRNGYQQITELIQQGKCDVLCCYRLNRLHRN
LKNALKLIKLCQKYNVDIFSVSDGYFDLNKSFDRLKLNIFISLAELESDNIGEQVSNGIKEKARQGKLITTHAPFGYHYY
NGTFVINPGEAQTVTAVFKYYLQGYGYKKIAQYLEKDNKLINRKPYQVRNIIMNPNYCGRVNNKYGTFDNMFPFIISKSV
YKNAQSIRVNKQVQRTPSANLLKQKIKCPCCDSTLTNMTIRKKEHTLRYYVCPKNMNESRFVCSFKGINAQKLEVQVLAT
CQNFFQNQQLYSKINNTIHQRLKKQRVIEAKSTLTHEQLIDKLAKGMIDAESFRKQTHSMNQKHKTISSLSDNQLQTSLQ
NVIQKSFTLNMLYPYIDEIHITKNKALVGIYFKNEPLNIVNQTSQLSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1027706 AB3456_RS00185 WP_368679775.1 46498..47847(-) (ccrA) [Staphylococcus pseudoxylosus strain Hao 2022]
ATGAAACAAGCAATTGGCTATTTACGTCAAAGTACAACTAAGCAACAATCCCTAACAGCACAGAAACAAACCATCGAGGC
ATTATCCGAAAAATATAGTATTAAACACATCACTTTTTATAGTGATAAACAATCAGGACGAACTGATAAGCGGAATGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGAAAATGTGATGTATTATGCTGCTATCGACTTAATCGACTACATCGTAAT
TTGAAAAATGCGCTAAAATTAATTAAATTATGCCAGAAGTACAATGTAGATATCTTCAGTGTTAGCGATGGCTATTTTGA
CTTAAACAAATCATTTGATCGTCTAAAACTCAATATCTTCATTTCATTAGCTGAACTTGAGTCAGATAATATTGGTGAAC
AAGTAAGCAACGGAATAAAAGAAAAAGCACGTCAAGGTAAACTAATTACCACACATGCACCTTTTGGATATCATTATTAT
AATGGCACATTTGTAATCAACCCAGGAGAAGCACAAACGGTGACTGCAGTATTCAAATACTATCTTCAAGGGTATGGTTA
CAAAAAGATTGCACAATATTTGGAAAAAGATAATAAGTTAATCAACCGAAAACCATATCAAGTACGTAACATTATTATGA
ACCCTAATTACTGTGGACGTGTGAATAACAAATACGGCACCTTTGATAATATGTTCCCATTTATTATCAGTAAATCAGTG
TATAAAAATGCTCAATCAATACGAGTAAATAAACAAGTTCAGCGCACGCCTTCTGCTAATTTACTCAAACAAAAGATCAA
ATGTCCTTGTTGTGACTCAACACTGACAAATATGACCATAAGAAAAAAAGAACATACATTGCGATATTATGTTTGTCCTA
AAAATATGAATGAATCTCGCTTTGTCTGTTCATTCAAAGGGATAAATGCACAAAAATTAGAAGTTCAAGTCTTAGCTACA
TGTCAGAACTTCTTTCAAAACCAACAGCTCTATTCAAAAATTAATAATACGATTCATCAACGCCTCAAAAAACAAAGAGT
GATAGAAGCTAAAAGTACGCTAACTCACGAACAACTGATAGATAAACTTGCCAAAGGTATGATTGATGCTGAATCATTCA
GAAAACAGACTCATTCGATGAATCAAAAGCACAAAACCATATCCTCCTTAAGTGATAATCAGTTACAAACATCACTACAA
AATGTGATACAGAAAAGTTTCACGTTAAACATGCTGTATCCCTATATTGATGAAATTCATATTACTAAAAACAAAGCCCT
TGTTGGGATCTATTTCAAAAATGAACCACTGAACATTGTGAACCAAACCTCGCAATTATCGATTGCCTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(170-248)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(261-322)

Resolvase, N terminal domain (Resolvase)

(4-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

77.728

100

0.777
  ccrA Staphylococcus aureus N315

70.824

100

0.708

Multiple sequence alignment