Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   AB3456_RS00180 Genome accession   NZ_CP162632
Coordinates   44850..46478 (-) Length   542 a.a.
NCBI ID   WP_358246520.1    Uniprot ID   -
Organism   Staphylococcus pseudoxylosus strain Hao 2022     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 39850..51478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3456_RS00155 (AB3456_00155) - 40733..42520 (-) 1788 WP_358246517.1 class I SAM-dependent DNA methyltransferase -
  AB3456_RS00160 (AB3456_00160) - 42835..43082 (-) 248 Protein_29 JAB domain-containing protein -
  AB3456_RS00165 (AB3456_00165) - 43110..43616 (-) 507 WP_358246518.1 DUF1643 domain-containing protein -
  AB3456_RS00170 (AB3456_00170) - 43632..43943 (-) 312 WP_358246519.1 DUF960 family protein -
  AB3456_RS00175 (AB3456_00175) - 44037..44378 (-) 342 WP_325970504.1 SAUGI family uracil-DNA glycosylase inhibitor -
  AB3456_RS00180 (AB3456_00180) ccrB 44850..46478 (-) 1629 WP_358246520.1 cassette chromosome recombinase CcrB Machinery gene
  AB3456_RS00185 (AB3456_00185) ccrA 46498..47847 (-) 1350 WP_368679775.1 cassette chromosome recombinase CcrA Machinery gene
  AB3456_RS00190 (AB3456_00190) - 48018..48281 (-) 264 WP_119646829.1 hypothetical protein -
  AB3456_RS00195 (AB3456_00195) cch1 48347..50137 (-) 1791 WP_358246521.1 cassette chromosome replicative helicase -
  AB3456_RS00200 (AB3456_00200) - 50137..50286 (-) 150 WP_180937095.1 hypothetical protein -
  AB3456_RS00205 (AB3456_00205) - 50469..51461 (-) 993 WP_368679776.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62342.33 Da        Isoelectric Point: 10.0035

>NTDB_id=1027705 AB3456_RS00180 WP_358246520.1 44850..46478(-) (ccrB) [Staphylococcus pseudoxylosus strain Hao 2022]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCDFNNFAVVDVYADRGISGKSMNRPELQRLLKDANEGQIDSVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYGKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKNKPFSIGSVTYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVIANGKHSPIISQELWDKVQARKKQVSKKPQVHGKGTNILTGLISCPKCSASMSASTTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVINQVVERVNKGKQVDIAALNHDIAYKQQQFD
KVHAKLDNLVKTVEDNPDLTSALKETIHQYEKQMTDISKQINLLKQKQNEDKPSYDTKQLSVLLRRIFQNIESMDKTQIK
ALFLTIIDHIDIRKDSNHKKQFYVTLKLNNDIIKQLFNNSPLDEVLLSTSSLFLPQTFYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=1027705 AB3456_RS00180 WP_358246520.1 44850..46478(-) (ccrB) [Staphylococcus pseudoxylosus strain Hao 2022]
ATGCAACAACTTAAACAAAAACGTGTCGGTATTTATGTCCGTGTATCAACAGAAATGCAAAGTACTGAAGGATATAGTAT
CGATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGCTGTTGTAGATGTATACGCGGATAGAGGTA
TTTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTGTTAAAAGATGCGAACGAAGGTCAGATCGATTCTGTTATG
GTCTACAAAACAAACCGACTAGCACGTAACACTTCTGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAGCGTATGGAAGTCAATACAAGCAGTGGTAAATTGATGTTACAAATTCTAGCGAGTTTTTCAG
AATTTGAAAGAAATAATATTGTCGAGAATGTATTCATGGGACAAACTCGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCATTAGGCTATGGTAAGATACCAGATAATAAACATGAACTCATGATTAATCAACATGAAGCCAATATCGTTAAATA
CATCTTTGAATCATATGCGAAAGGACATGGATATCGTAAAATTGCTAATGCTCTCAATCATAAAGGTTATGTCACTAAAA
AAAATAAACCATTCAGTATTGGTTCAGTGACCTATATCTTATCTAATCCATTCTATATTGGTAAAATTCAATTTGCCAAA
TACAAAGATTGGAATGAAAAACGTCGTAAGGGATTAAATGATAATCCAGTAATTGCTAATGGAAAGCACTCCCCTATCAT
TAGTCAAGAGCTGTGGGATAAAGTACAAGCTCGTAAGAAGCAAGTCAGCAAAAAACCACAAGTTCATGGTAAAGGGACAA
ATATTTTAACTGGGTTAATTTCGTGTCCAAAATGTTCTGCTTCTATGTCTGCGAGCACGACAACCAATACACTTAAAGAT
GGTACAAAAAAGCGAATACGCTATTATTCCTGTAGTAATTTTCGCAACAAAGGATCGAAAGTGTGTTCTGCAAATAGTGT
AAGGGCAGATGTCATAGAAAAATATGTCATGGATCAAATACTCGAAATTGTCAAAAGTGATAAGGTCATCAACCAAGTCG
TAGAACGTGTCAATAAAGGGAAGCAAGTCGATATAGCTGCACTTAACCATGATATCGCTTATAAGCAACAACAATTCGAT
AAAGTTCATGCAAAACTAGATAATCTGGTTAAAACAGTTGAAGATAACCCTGACCTTACATCTGCGCTGAAAGAAACAAT
CCATCAATATGAAAAGCAAATGACTGATATTTCAAAGCAAATCAATCTACTCAAACAAAAACAAAATGAAGATAAGCCAT
CTTATGATACAAAGCAATTATCTGTACTATTACGACGTATATTTCAAAATATAGAATCTATGGACAAAACACAAATCAAA
GCATTATTTCTTACCATTATTGACCATATTGATATTCGAAAAGATAGTAATCATAAAAAGCAATTCTATGTCACACTGAA
ACTCAATAATGACATCATTAAACAACTTTTCAATAATTCTCCACTCGACGAAGTGCTTCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACATTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(302-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

82.288

100

0.823

Multiple sequence alignment