Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB4027_RS00870 Genome accession   NZ_CP162615
Coordinates   162868..164238 (+) Length   456 a.a.
NCBI ID   WP_091489350.1    Uniprot ID   A0A1H7WCM1
Organism   Alkalibacterium putridalgicola strain BIM B-1968     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 157868..169238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4027_RS00845 (AB4027_00845) - 158032..158829 (+) 798 WP_368645602.1 ABC transporter permease -
  AB4027_RS00850 (AB4027_00850) - 158981..159280 (-) 300 WP_091489356.1 HesB/YadR/YfhF family protein -
  AB4027_RS00855 (AB4027_00855) - 159354..160469 (-) 1116 WP_368645603.1 NADH-dependent flavin oxidoreductase -
  AB4027_RS00860 (AB4027_00860) - 160964..162070 (+) 1107 WP_368645604.1 ABC transporter ATP-binding protein -
  AB4027_RS00865 (AB4027_00865) dut 162253..162750 (+) 498 WP_368645605.1 dUTP diphosphatase -
  AB4027_RS00870 (AB4027_00870) radA 162868..164238 (+) 1371 WP_091489350.1 DNA repair protein RadA Machinery gene
  AB4027_RS00875 (AB4027_00875) - 164325..165440 (+) 1116 WP_091489349.1 PIN/TRAM domain-containing protein -
  AB4027_RS00880 (AB4027_00880) - 165433..166131 (+) 699 WP_368645606.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AB4027_RS00885 (AB4027_00885) gltX 166247..167725 (+) 1479 WP_368645607.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49921.47 Da        Isoelectric Point: 7.3270

>NTDB_id=1027553 AB4027_RS00870 WP_091489350.1 162868..164238(+) (radA) [Alkalibacterium putridalgicola strain BIM B-1968]
MAKKKATVFVCQNCGYESPKYLGKCPSCGTWNQMVEEKLPDKSDSRSRVTMSGKASKAEPITDITIEKEERVKTKMVEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSAQLNQQGGKVLYVSGEESTAQIKMRAERLELRGTDFYLYAETEVTAIQE
TIETLKPDYVIIDSIQTMHHANIDSASGSVSQVRESTSTLMQIAKMNEIAIFIVGHVTKEGAIAGPRMLEHMVDTVLYFE
GEQHHTFRILRAVKNRFGSTNEIGIFEMKNGGLEEVLNPSQLFLEERLAGATGSAVVAAMEGTRPMLVEIQSLISPTVFG
NAKRTSSGLDYSRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVRLDEPAIDLSIAISIASSYKEKETRPTDCFIGEIGLTG
EIRSISKIEQRVKEAAKLGFKRIFIPKNNKDGWDMPKNIEVIGCTTLSEAIKRAFS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1027553 AB4027_RS00870 WP_091489350.1 162868..164238(+) (radA) [Alkalibacterium putridalgicola strain BIM B-1968]
TTGGCAAAAAAGAAAGCAACTGTATTTGTCTGTCAAAACTGCGGCTATGAATCTCCGAAATATTTAGGGAAATGTCCAAG
CTGCGGCACCTGGAATCAGATGGTCGAAGAAAAACTGCCGGATAAATCCGACAGCCGAAGCCGTGTGACCATGTCGGGTA
AAGCATCCAAGGCAGAACCTATTACAGACATAACCATAGAAAAAGAAGAGCGTGTAAAAACAAAAATGGTTGAATTCAAC
CGTGTCCTGGGTGGCGGCGTCGTACCCGGCTCACTCGTTCTGATCGGTGGAGATCCGGGTATAGGGAAATCCACGCTGCT
CTTGCAGGTATCGGCACAGTTGAACCAGCAGGGCGGGAAAGTACTGTACGTTTCCGGTGAGGAAAGTACCGCCCAGATAA
AAATGAGAGCGGAACGGCTGGAATTGCGCGGGACCGACTTTTATTTATATGCGGAGACTGAAGTGACTGCTATACAGGAA
ACGATCGAAACACTGAAACCGGATTATGTCATCATCGACTCGATCCAGACGATGCACCACGCAAATATCGACAGTGCTTC
CGGAAGTGTATCTCAGGTAAGAGAATCGACGTCCACATTGATGCAGATAGCGAAGATGAACGAGATCGCTATTTTCATCG
TCGGCCATGTGACCAAAGAAGGCGCGATCGCCGGTCCGAGAATGCTTGAGCACATGGTGGATACCGTGCTTTATTTTGAA
GGTGAACAGCACCATACCTTCCGTATCCTGAGAGCCGTTAAGAACCGTTTCGGATCGACGAATGAGATCGGGATATTTGA
GATGAAGAACGGTGGCCTCGAAGAAGTCCTTAACCCGTCACAGCTCTTTCTGGAGGAACGTCTAGCGGGAGCCACAGGAT
CGGCCGTCGTAGCCGCGATGGAAGGGACGCGACCGATGCTCGTTGAGATCCAGTCACTGATATCTCCAACCGTTTTCGGT
AATGCAAAACGGACATCCAGCGGACTGGATTACTCGCGAGTTTCCCTGATCATGGCCGTGCTGGAAAAACGTGCCGGACT
CCTGCTGCAGAATCAGGATGCTTACTTGAAAGCTGCAGGTGGCGTACGTCTGGATGAGCCGGCTATCGATTTATCCATCG
CTATCAGCATCGCCTCCAGTTATAAAGAGAAAGAGACACGGCCAACGGACTGTTTCATAGGCGAAATCGGTCTGACGGGT
GAAATAAGAAGTATTTCTAAAATCGAGCAGCGTGTCAAAGAAGCGGCTAAACTGGGGTTCAAGCGTATTTTTATTCCTAA
AAACAATAAAGACGGCTGGGACATGCCCAAAAACATAGAAGTGATTGGATGTACCACGTTGTCTGAAGCGATAAAACGGG
CTTTTTCGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(365-429)

AAA domain (AAA_25)

(78-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H7WCM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

68.202

100

0.682
  radA Streptococcus pneumoniae D39

68.202

100

0.682
  radA Streptococcus pneumoniae R6

68.202

100

0.682
  radA Streptococcus pneumoniae TIGR4

68.202

100

0.682
  radA Streptococcus mitis NCTC 12261

68.202

100

0.682
  radA Streptococcus mitis SK321

67.982

100

0.68
  radA Bacillus subtilis subsp. subtilis str. 168

65.066

100

0.654

Multiple sequence alignment