Detailed information NTG1027461

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4Y39_RS25945
• Genome accession: NZ_CP162607
• Coordinates: 5579818..5580687 (-)
• Length: 289 a.a.
• NCBI ID: WP_045190406.1
• Uniprot ID: A0AB39AZI0
• Organism: Pseudomonas sp. Hg7Tf
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5574818..5585687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4Y39_RS25910 (AB4Y39_25910)	-	5575330..5575668 (+)	339	WP_045190400.1	hypothetical protein	-
AB4Y39_RS25915 (AB4Y39_25915)	-	5575835..5577130 (-)	1296	WP_045190401.1	NAD(P)/FAD-dependent oxidoreductase	-
AB4Y39_RS25920 (AB4Y39_25920)	-	5577215..5577388 (-)	174	WP_036989987.1	DUF3094 family protein	-
AB4Y39_RS25925 (AB4Y39_25925)	-	5577557..5578186 (-)	630	WP_045190402.1	DUF1780 domain-containing protein	-
AB4Y39_RS25930 (AB4Y39_25930)	-	5578299..5578988 (+)	690	WP_045190403.1	energy-coupling factor ABC transporter permease	-
AB4Y39_RS25935 (AB4Y39_25935)	yacG	5578992..5579198 (-)	207	WP_045190404.1	DNA gyrase inhibitor YacG	-
AB4Y39_RS25940 (AB4Y39_25940)	coaE	5579195..5579818 (-)	624	WP_101291922.1	dephospho-CoA kinase	-
AB4Y39_RS25945 (AB4Y39_25945)	pilD	5579818..5580687 (-)	870	WP_045190406.1	A24 family peptidase	Machinery gene
AB4Y39_RS25950 (AB4Y39_25950)	-	5580690..5581898 (-)	1209	WP_045190407.1	type II secretion system F family protein	-
AB4Y39_RS25955 (AB4Y39_25955)	-	5582120..5582548 (+)	429	WP_274072112.1	pilin	-
AB4Y39_RS25965 (AB4Y39_25965)	-	5582853..5584070 (+)	1218	WP_368491618.1	tyrosine-type recombinase/integrase	-
AB4Y39_RS25970 (AB4Y39_25970)	-	5584067..5584789 (+)	723	WP_280043256.1	hypothetical protein	-
AB4Y39_RS25975 (AB4Y39_25975)	-	5584904..5585113 (+)	210	WP_125921985.1	AlpA family transcriptional regulator	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31827.14 Da
• Isoelectric Point: 7.9444

>NTDB_id=1027461 AB4Y39_RS25945 WP_045190406.1 5579818..5580687(-) (pilD) [Pseudomonas sp. Hg7Tf]
MDLMDTLASQPLLYLGFALLLGLVVGSFLNVLVHRLPIMLQRQWQVEAREVLDLPEEATPERYNLCLPASQCPQCGHRIR
PWENIPVVSYLLLRGRCSRCRSAISVRYPLVELGCAALTVFVAWQLGASSSTVVVLLFSWGLLAMSLIDIEHRLLPDVLV
LPLLWLGLIVNAFGLLVPLEDALWGAVVGYLSLWSMFWLFKLITGKEGMGYGDFKLLALIGAWGGWQVLPLTLLLSSVLG
AVIGLIMLRVKGLKASTPIPFGPYLAIAGWIALLWGGQITTSYLKFSGL

Nucleotide

• Length: 870 bp

>NTDB_id=1027461 AB4Y39_RS25945 WP_045190406.1 5579818..5580687(-) (pilD) [Pseudomonas sp. Hg7Tf]
ATGGACCTGATGGATACGCTGGCCAGCCAGCCGCTGCTGTACCTGGGTTTTGCCCTGCTGCTGGGGCTGGTCGTCGGCAG
TTTTCTCAACGTGCTGGTGCATCGTTTGCCGATCATGCTGCAACGCCAGTGGCAGGTGGAAGCGCGGGAGGTGCTCGACC
TGCCCGAAGAAGCCACGCCTGAGCGTTACAACCTGTGCCTGCCCGCTTCACAGTGCCCGCAGTGCGGGCATCGTATTCGC
CCCTGGGAGAACATCCCGGTAGTGAGTTACCTGTTGTTGCGTGGGCGCTGTTCCCGTTGCCGCAGCGCCATCAGCGTGCG
CTATCCGTTGGTAGAACTGGGCTGCGCAGCGCTGACGGTGTTTGTCGCCTGGCAACTGGGGGCCAGCAGCAGTACGGTCG
TCGTGCTGTTGTTCAGTTGGGGCTTGCTGGCCATGAGCCTGATCGACATCGAGCACCGGCTGTTACCCGATGTGCTGGTG
CTGCCGCTGTTGTGGCTGGGGCTTATCGTCAATGCCTTCGGGTTGCTGGTGCCGCTTGAGGATGCGCTGTGGGGCGCGGT
TGTCGGCTATTTGAGCCTGTGGTCGATGTTCTGGCTGTTCAAGCTCATCACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGTTGCTGGCGCTGATCGGCGCCTGGGGCGGTTGGCAGGTTCTGCCGCTGACGCTGCTGTTGTCGTCGGTGCTGGGG
GCGGTGATCGGGCTGATTATGCTGCGGGTTAAAGGCCTCAAGGCCAGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
CGCGGGCTGGATCGCTCTGCTCTGGGGTGGTCAAATAACCACTTCTTACCTGAAATTCTCTGGATTGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	49.65	98.962	0.491
pilD	Vibrio cholerae strain A1552	49.648	98.27	0.488
pilD	Acinetobacter baumannii D1279779	47.81	94.81	0.453
pilD	Acinetobacter nosocomialis M2	47.08	94.81	0.446
pilD	Neisseria gonorrhoeae MS11	49.02	88.235	0.433