Detailed information NTG1027409

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB0763_RS11290
• Genome accession: NZ_CP162601
• Coordinates: 2575506..2576498 (-)
• Length: 330 a.a.
• NCBI ID: WP_306100586.1
• Uniprot ID: A0AB39H9Z2
• Organism: Vibrio sp. HB236076
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2570506..2581498

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0763_RS11280 (AB0763_11280)	-	2571157..2572629 (+)	1473	WP_306100588.1	methyl-accepting chemotaxis protein	-
AB0763_RS11285 (AB0763_11285)	mutS	2572836..2575427 (+)	2592	WP_306100587.1	DNA mismatch repair protein MutS	-
AB0763_RS11290 (AB0763_11290)	rpoS	2575506..2576498 (-)	993	WP_306100586.1	RNA polymerase sigma factor RpoS	Regulator
AB0763_RS11295 (AB0763_11295)	-	2576568..2577434 (-)	867	WP_306100602.1	peptidoglycan DD-metalloendopeptidase family protein	-
AB0763_RS11300 (AB0763_11300)	-	2577508..2578134 (-)	627	WP_306100585.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AB0763_RS11305 (AB0763_11305)	surE	2578134..2578892 (-)	759	WP_306100584.1	5'/3'-nucleotidase SurE	-
AB0763_RS11310 (AB0763_11310)	truD	2578892..2579926 (-)	1035	WP_306100583.1	tRNA pseudouridine(13) synthase TruD	-
AB0763_RS11315 (AB0763_11315)	ispF	2579926..2580411 (-)	486	WP_306100582.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB0763_RS11320 (AB0763_11320)	ispD	2580408..2581112 (-)	705	WP_306100581.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AB0763_RS11325 (AB0763_11325)	ftsB	2581109..2581390 (-)	282	WP_306100580.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38174.34 Da
• Isoelectric Point: 4.7090

>NTDB_id=1027409 AB0763_RS11290 WP_306100586.1 2575506..2576498(-) (rpoS) [Vibrio sp. HB236076]
MTTNNTLLKSDDLDFENNMDMVSTSRFDIDNTDKTTKADIEEVEVTSKIMDATHLYLGEIGFSPLLTAQEEVFYARRSLR
GDKVARQRMIESNLRLVVKISRRYINRGLALLDLIEEGNLGLIRAVEKFDPEKGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHIVKELNIYLRTARELSQKLEHEPTPEEIAQQLDISVAEVTKMMRLNERVTSVDIYISNGDGNEKALLDVIPDDHN
SDPEVTTQDDNMSQVLTVWLDKLSDKQKDVLARRFGLFGYEPATLEEVGREIGLTRERVRQIQVEGLRRLREILIAEGLD
IESLFDFHQE

Nucleotide

• Length: 993 bp

>NTDB_id=1027409 AB0763_RS11290 WP_306100586.1 2575506..2576498(-) (rpoS) [Vibrio sp. HB236076]
ATGACAACAAATAATACATTATTAAAAAGCGACGATTTGGATTTTGAAAACAATATGGACATGGTTTCAACATCCCGTTT
TGATATTGACAATACAGACAAAACAACCAAAGCCGATATTGAAGAGGTGGAAGTCACCTCGAAGATAATGGATGCCACGC
ATTTGTACCTCGGTGAAATCGGTTTTTCACCCTTATTGACTGCTCAAGAAGAGGTTTTTTATGCACGACGGTCATTGAGA
GGTGATAAAGTTGCCCGTCAGCGAATGATAGAGAGCAACTTGCGTTTGGTGGTTAAAATTTCTCGCCGCTACATTAACCG
AGGCTTAGCGCTTTTAGATTTAATTGAAGAAGGCAACCTGGGGTTAATCCGCGCGGTTGAAAAGTTCGATCCTGAAAAAG
GGTTTCGTTTTTCAACCTACGCAACATGGTGGATTCGTCAAACGATAGAACGCGCTCTAATGAATCAGACTCGTACTATC
CGTTTGCCTATCCACATTGTCAAAGAGTTGAACATTTACTTGAGAACCGCTCGTGAGTTGTCTCAAAAGCTTGAGCATGA
GCCAACACCAGAAGAGATTGCTCAACAACTCGACATTTCAGTGGCCGAAGTCACCAAAATGATGCGTCTAAATGAAAGGG
TAACATCGGTCGATATTTACATCAGTAATGGCGATGGTAATGAAAAAGCGTTACTTGATGTTATACCCGATGATCATAAC
TCAGATCCTGAGGTGACCACCCAAGATGACAATATGAGCCAAGTGTTGACCGTTTGGCTCGATAAACTCAGCGACAAGCA
AAAAGACGTATTAGCGAGACGCTTTGGGTTGTTTGGCTATGAACCAGCGACTCTTGAAGAAGTTGGCCGAGAAATTGGCT
TAACGCGTGAAAGAGTGAGGCAGATACAAGTTGAAGGTCTACGCAGGCTAAGAGAAATATTGATTGCCGAAGGTCTAGAT
ATCGAAAGCTTGTTTGATTTCCACCAAGAGTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 region 3 (Sigma70_r3) (169-244)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-83)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	70.181	100	0.706