Detailed information NTG1027405

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB0763_RS11110
• Genome accession: NZ_CP162601
• Coordinates: 2544720..2545589 (+)
• Length: 289 a.a.
• NCBI ID: WP_306100620.1
• Uniprot ID: A0AB39HD36
• Organism: Vibrio sp. HB236076
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2539720..2550589

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0763_RS11085 (AB0763_11085)	ampD	2539818..2540396 (-)	579	WP_306100625.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
AB0763_RS11090 (AB0763_11090)	nadC	2540490..2541380 (+)	891	WP_306100624.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AB0763_RS11095 (AB0763_11095)	-	2541533..2542030 (+)	498	WP_306100623.1	pilin	-
AB0763_RS11100 (AB0763_11100)	-	2542030..2543475 (+)	1446	WP_306100622.1	GspE/PulE family protein	-
AB0763_RS11105 (AB0763_11105)	-	2543472..2544686 (+)	1215	WP_306100621.1	type II secretion system F family protein	-
AB0763_RS11110 (AB0763_11110)	pilD	2544720..2545589 (+)	870	WP_306100620.1	A24 family peptidase	Machinery gene
AB0763_RS11115 (AB0763_11115)	coaE	2545592..2546206 (+)	615	WP_306100619.1	dephospho-CoA kinase	-
AB0763_RS11120 (AB0763_11120)	zapD	2546234..2546971 (+)	738	WP_306100618.1	cell division protein ZapD	-
AB0763_RS11125 (AB0763_11125)	yacG	2546990..2547175 (+)	186	WP_306100617.1	DNA gyrase inhibitor YacG	-
AB0763_RS11130 (AB0763_11130)	rplS	2547299..2547652 (-)	354	WP_306100616.1	50S ribosomal protein L19	-
AB0763_RS11135 (AB0763_11135)	trmD	2547694..2548437 (-)	744	WP_306100615.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AB0763_RS11140 (AB0763_11140)	rimM	2548464..2549018 (-)	555	WP_306100614.1	ribosome maturation factor RimM	-
AB0763_RS11145 (AB0763_11145)	rpsP	2549040..2549288 (-)	249	WP_117233716.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32270.47 Da
• Isoelectric Point: 7.6197

>NTDB_id=1027405 AB0763_RS11110 WP_306100620.1 2544720..2545589(+) (pilD) [Vibrio sp. HB236076]
MTYFSASPIWFIALSSLFGLIIGSFLNVIIVRLPKIMENQWRQELRNCFPSEVSESQEPVLSLSLPRSHCPHCQTPLRIR
DNIPLISFLCLRGRCHACRSKISWRYPLVEGISAMLTLAIFLKYDWTLLAFAYCGVIYSLLVLALIDWDTFLLPDTITLP
LMWAGLLAAYLGISPVSLEHALLGAMAGYLVLWTLYWAFKLITGKEGLGYGDFKLLAALGAWVGSLYLLPILLIASFSGL
FLALILLRKHQGDIQQPMPFGPSLAFAGALLLLWGEDIVSAYTHLILGY

Nucleotide

• Length: 870 bp

>NTDB_id=1027405 AB0763_RS11110 WP_306100620.1 2544720..2545589(+) (pilD) [Vibrio sp. HB236076]
ATGACTTATTTTTCCGCCTCACCTATTTGGTTTATCGCCCTATCGAGTCTATTCGGGTTAATTATTGGCAGCTTCCTCAA
TGTTATCATTGTAAGGCTGCCGAAAATAATGGAAAACCAATGGAGACAAGAACTGCGCAACTGCTTTCCAAGCGAGGTTT
CAGAATCACAAGAGCCCGTTTTATCCTTGTCTTTGCCCCGTTCTCATTGCCCTCATTGTCAAACTCCGTTACGCATTCGC
GACAACATTCCTCTCATCAGCTTTTTGTGTCTGCGCGGGCGTTGCCATGCTTGCCGAAGTAAAATCAGTTGGCGTTATCC
GCTGGTCGAAGGAATCAGTGCGATGTTAACCCTTGCCATTTTTCTTAAGTACGATTGGACACTACTCGCTTTTGCTTACT
GCGGCGTGATTTACAGTTTACTCGTCCTTGCTTTGATCGATTGGGATACTTTTCTGTTGCCGGACACCATCACTTTACCG
CTCATGTGGGCTGGGCTTTTAGCGGCCTACTTAGGCATATCTCCCGTGTCGTTAGAACACGCCCTACTCGGTGCGATGGC
GGGTTATTTGGTGCTGTGGACCTTGTATTGGGCATTTAAGCTTATCACTGGAAAGGAGGGGCTTGGCTACGGAGATTTTA
AATTGCTGGCGGCGTTAGGGGCTTGGGTCGGCAGCCTGTATTTACTGCCTATTTTATTAATTGCTTCATTTTCGGGGCTG
TTTTTGGCACTGATTTTACTGCGTAAACACCAAGGGGATATACAGCAACCGATGCCGTTTGGGCCAAGCTTAGCCTTTGC
TGGGGCATTACTCCTGCTCTGGGGAGAAGACATTGTATCGGCTTACACTCACTTGATTTTGGGGTATTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.546	97.578	0.522
pilD	Vibrio campbellii strain DS40M4	50.694	99.654	0.505
pilD	Acinetobacter baumannii D1279779	44.195	92.388	0.408
pilD	Acinetobacter nosocomialis M2	44.195	92.388	0.408
pilD	Neisseria gonorrhoeae MS11	40.856	88.927	0.363