Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   AB0763_RS11060 Genome accession   NZ_CP162601
Coordinates   2531649..2532251 (+) Length   200 a.a.
NCBI ID   WP_306100630.1    Uniprot ID   A0AB39H9P8
Organism   Vibrio sp. HB236076     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2526649..2537251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0763_RS11035 (AB0763_11035) panC 2527025..2527939 (+) 915 WP_306100636.1 pantoate--beta-alanine ligase -
  AB0763_RS11040 (AB0763_11040) - 2528166..2528936 (-) 771 WP_306100634.1 ABC transporter permease -
  AB0763_RS11045 (AB0763_11045) - 2528945..2529859 (-) 915 WP_306100633.1 ABC transporter ATP-binding protein -
  AB0763_RS11050 (AB0763_11050) can 2530088..2530750 (+) 663 WP_306100632.1 carbonate dehydratase -
  AB0763_RS11055 (AB0763_11055) hpt 2530786..2531313 (-) 528 WP_306100631.1 hypoxanthine phosphoribosyltransferase -
  AB0763_RS11060 (AB0763_11060) opaR 2531649..2532251 (+) 603 WP_306100630.1 TetR/AcrR family transcriptional regulator Regulator
  AB0763_RS11065 (AB0763_11065) lpdA 2532488..2533915 (-) 1428 WP_306100629.1 dihydrolipoyl dehydrogenase -
  AB0763_RS11070 (AB0763_11070) aceF 2534155..2536035 (-) 1881 WP_306100628.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23349.77 Da        Isoelectric Point: 6.3433

>NTDB_id=1027404 AB0763_RS11060 WP_306100630.1 2531649..2532251(+) (opaR) [Vibrio sp. HB236076]
METITKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEVAQVSVATVFNYFPTREDLVDEVLNHVVRQLSNFLT
DHIDMEQPIQDNMTNIIENMVLNVEHDCYWMKVWFEWSASTREEVWPLFVSSNRTNQLLIQNMFSNAIEKGEIDNSFKPE
HLSNLFLAMSYSIFVQANRSASSKEIKELLKSYFSMLRFI

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1027404 AB0763_RS11060 WP_306100630.1 2531649..2532251(+) (opaR) [Vibrio sp. HB236076]
ATGGAAACGATAACAAAAAGACCTCGAACTCGGCTTTCCCCTCTCAAACGCAAACAACAATTAATGGAAATTGCTTTAGA
AGTATTCGCTCGTCGTGGTATTGGTCGCGGAGGGCATGCAGACATTGCAGAAGTTGCTCAGGTTTCCGTTGCAACAGTCT
TTAACTACTTCCCCACTCGTGAGGATTTGGTCGACGAAGTGCTTAATCATGTAGTTCGCCAACTGTCGAACTTTCTCACC
GATCACATCGATATGGAGCAGCCTATCCAGGACAACATGACCAATATCATTGAAAATATGGTACTCAATGTTGAGCATGA
TTGTTATTGGATGAAAGTGTGGTTTGAATGGAGTGCGTCCACCCGTGAAGAGGTGTGGCCTTTGTTCGTTAGCAGTAATC
GCACTAATCAGTTGCTGATCCAGAACATGTTCAGCAACGCGATTGAAAAAGGCGAAATCGACAATAGCTTTAAACCCGAG
CACTTATCTAATCTCTTTCTCGCGATGTCCTACTCTATTTTTGTCCAAGCCAATCGCTCAGCCAGCAGTAAAGAGATTAA
AGAATTATTGAAAAGCTATTTTTCAATGCTGCGGTTCATCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

71.574

98.5

0.705
  hapR Vibrio cholerae C6706

65.128

97.5

0.635
  hapR Vibrio cholerae strain A1552

65.128

97.5

0.635

Multiple sequence alignment