Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AB0763_RS02085 Genome accession   NZ_CP162601
Coordinates   429446..430462 (-) Length   338 a.a.
NCBI ID   WP_306102387.1    Uniprot ID   A0AB39HH64
Organism   Vibrio sp. HB236076     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 424446..435462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0763_RS02060 (AB0763_02060) - 424963..425877 (-) 915 WP_306102391.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  AB0763_RS02065 (AB0763_02065) - 426208..426333 (+) 126 WP_306102390.1 hypothetical protein -
  AB0763_RS02070 (AB0763_02070) hslU 426504..427841 (-) 1338 WP_306102389.1 HslU--HslV peptidase ATPase subunit -
  AB0763_RS02075 (AB0763_02075) hslV 427875..428429 (-) 555 WP_306102388.1 ATP-dependent protease subunit HslV -
  AB0763_RS02080 (AB0763_02080) - 428644..429219 (-) 576 WP_306102399.1 SPOR domain-containing protein -
  AB0763_RS02085 (AB0763_02085) cytR 429446..430462 (-) 1017 WP_306102387.1 DNA-binding transcriptional regulator CytR Regulator
  AB0763_RS02090 (AB0763_02090) priA 430776..432980 (-) 2205 WP_306102386.1 primosomal protein N' -
  AB0763_RS02095 (AB0763_02095) rpmE 433358..433576 (+) 219 WP_306102385.1 50S ribosomal protein L31 -
  AB0763_RS02100 (AB0763_02100) - 433745..435016 (+) 1272 WP_306102384.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37563.91 Da        Isoelectric Point: 6.5850

>NTDB_id=1027393 AB0763_RS02085 WP_306102387.1 429446..430462(-) (cytR) [Vibrio sp. HB236076]
MATMKDVARLAGVSTATVSRAIMTPEKVSPATRSRVEAAVTESGYTPHIQMSRSLKRSESKTIVAIVPDISDMYFADLIR
GVEETAHANGYLLLVGDSHSQDYREETFVNMAYRKQADGLILLGTDLPFGISKAEQRFLPPLVMACEYSHELDLPTVHID
NLTAAFEAVNYLTRLGHQRIAQISGPIQSNLCQFRNQGYLQAIRRSGVELDESLTVYTEFSLDGGKQAAHSLMTRSKPPT
AIFCHSDSIAIGALHEVKRLGFRVPDDVSIIGFDDIDMVQYTEPPLTTISQPRYEIGRQAMLKLLEILRGKPNSTQSRSC
LLETELIVRESTDVCRKR

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=1027393 AB0763_RS02085 WP_306102387.1 429446..430462(-) (cytR) [Vibrio sp. HB236076]
ATGGCAACGATGAAAGATGTTGCAAGGTTAGCCGGCGTATCAACGGCAACGGTTTCTCGGGCCATCATGACCCCGGAAAA
GGTCTCCCCTGCCACCCGTAGTCGCGTCGAGGCCGCCGTGACAGAGTCAGGCTATACGCCTCACATCCAAATGTCTCGCA
GCCTCAAGCGCAGTGAGTCAAAAACCATTGTCGCCATTGTCCCTGATATTAGTGATATGTACTTTGCCGATTTGATTCGC
GGCGTTGAAGAAACCGCACATGCCAATGGCTACCTGTTGTTGGTCGGCGACAGCCACTCCCAAGACTACCGCGAAGAAAC
CTTTGTCAATATGGCTTATCGCAAACAAGCCGATGGACTCATTTTGCTTGGTACGGACTTGCCCTTTGGCATCAGTAAAG
CAGAGCAGCGCTTTTTGCCCCCGCTGGTCATGGCTTGTGAGTATTCCCACGAGCTCGACTTGCCCACCGTGCATATCGAC
AATTTAACCGCAGCCTTTGAGGCGGTGAATTACTTAACCCGCTTAGGTCATCAGCGCATCGCACAAATTTCTGGTCCGAT
ACAATCCAACTTGTGTCAATTTCGCAATCAAGGTTATTTACAGGCCATCAGACGCAGCGGCGTGGAGTTAGATGAATCGC
TCACGGTGTACACCGAATTTAGCCTCGACGGCGGCAAACAGGCGGCCCATTCTTTGATGACACGCTCCAAGCCACCGACC
GCCATTTTCTGTCACTCCGACAGCATCGCCATCGGCGCGTTGCACGAAGTCAAACGCTTGGGCTTTCGCGTTCCTGATGA
TGTGTCGATCATCGGCTTTGACGACATCGATATGGTGCAATACACCGAGCCACCATTGACCACCATTTCGCAGCCCCGCT
ATGAAATAGGTCGCCAGGCAATGTTGAAACTGTTAGAGATATTACGTGGTAAACCCAACAGTACCCAATCGCGCTCTTGC
CTATTAGAAACGGAACTGATTGTCCGTGAGAGTACCGATGTGTGTCGCAAGCGCTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-332)

Bacterial regulatory proteins, lacI family (LacI)

(3-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

65.257

97.929

0.639
  cytR Vibrio cholerae C6706

63.746

97.929

0.624

Multiple sequence alignment