Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB4Y30_RS09645 Genome accession   NZ_CP162599
Coordinates   1972377..1974098 (-) Length   573 a.a.
NCBI ID   WP_368652028.1    Uniprot ID   A0AB39HL77
Organism   Ornithinibacillus sp. 4-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1967377..1979098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y30_RS09625 (AB4Y30_09625) - 1968273..1968494 (+) 222 WP_368652024.1 DUF2627 domain-containing protein -
  AB4Y30_RS09630 (AB4Y30_09630) - 1968545..1969897 (+) 1353 WP_368652025.1 aspartate kinase -
  AB4Y30_RS09635 (AB4Y30_09635) spo0A 1969961..1970749 (-) 789 WP_368652026.1 sporulation transcription factor Spo0A -
  AB4Y30_RS09640 (AB4Y30_09640) spoIVB 1970916..1972145 (-) 1230 WP_368652027.1 SpoIVB peptidase -
  AB4Y30_RS09645 (AB4Y30_09645) recN 1972377..1974098 (-) 1722 WP_368652028.1 DNA repair protein RecN Machinery gene
  AB4Y30_RS09650 (AB4Y30_09650) argR 1974130..1974579 (-) 450 WP_368652029.1 transcriptional regulator ArgR -
  AB4Y30_RS09655 (AB4Y30_09655) - 1974599..1975414 (-) 816 WP_368652030.1 TlyA family RNA methyltransferase -
  AB4Y30_RS09660 (AB4Y30_09660) - 1975563..1976672 (-) 1110 WP_368652031.1 ABC transporter permease -
  AB4Y30_RS09665 (AB4Y30_09665) - 1976669..1977925 (-) 1257 WP_368652032.1 ABC transporter permease -
  AB4Y30_RS09670 (AB4Y30_09670) - 1977938..1978870 (-) 933 WP_368652033.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 65458.51 Da        Isoelectric Point: 5.4205

>NTDB_id=1027375 AB4Y30_RS09645 WP_368652028.1 1972377..1974098(-) (recN) [Ornithinibacillus sp. 4-3]
MLTELAIRNFAIIDELTINFDHGLTVLTGETGAGKSIIIDAVQLLAGERASVQFVRHGADKAEIEGLFSIEEAEHQVVEI
GALYGIDVNDAMIVLHRTITANGKSICRVNGKLVTLSVLKEIGSTLIDIHTQHETQSLMNADQHIHLLDLFDGKNILSIK
EKYLQKYNEYLQVLNRYKELSENEKELSHRLDLLEFQYNEINQAELSPDEDIELEEERSQLANYEKIFIGMQSAYNALYS
DQKALEWLNEAQMALQSIQDYNDFIQSKSKDLTNHYYNIEELAFQLRDHLDQMQYDEERLNEIETRLSEIDRLKRKYGTT
VNEILDYQSEIEEEINQIHNKDSHLASLELKLKENKLSAYELALELHQLRKKSADALTKSIHKELKGLYMENAQFFVDIE
KQANKSVDIDKINLHKNGLDHVQFKISTNIGEPLKALHRIASGGELSRIMLVMKTIFAKHQGVTSVIFDEVDTGVSGRVA
QAMAEKIYRISEQSQVLCITHLPQVAAMADAHMLIKKLEKDQRTSTTIEELSVKERVNELSRMITGKKITDTAKEHGKKL
LDLAKQFKKNLAK

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=1027375 AB4Y30_RS09645 WP_368652028.1 1972377..1974098(-) (recN) [Ornithinibacillus sp. 4-3]
ATGTTAACAGAATTAGCTATTCGAAATTTCGCAATTATAGACGAACTAACAATTAATTTTGATCATGGACTCACTGTACT
GACAGGAGAGACAGGTGCAGGAAAATCCATTATTATTGATGCTGTTCAATTATTAGCTGGTGAGAGAGCATCTGTTCAAT
TTGTCAGACATGGAGCAGATAAAGCAGAAATTGAAGGGCTATTTTCCATTGAAGAAGCAGAACATCAAGTGGTAGAGATA
GGCGCTTTATATGGGATTGATGTAAACGATGCAATGATTGTTTTACATCGAACAATTACTGCAAACGGAAAGAGTATTTG
CCGAGTAAATGGAAAGCTAGTTACATTAAGTGTGCTTAAAGAAATAGGTAGTACATTAATTGATATCCATACACAGCATG
AAACACAATCTTTAATGAATGCTGATCAACATATTCATTTACTTGATTTATTTGATGGAAAAAATATTCTTTCCATAAAA
GAAAAGTATCTTCAAAAGTATAATGAATACCTTCAAGTATTGAATCGCTATAAAGAACTAAGTGAAAATGAAAAAGAATT
ATCTCATCGACTTGATTTACTTGAATTTCAATACAATGAAATTAATCAAGCAGAATTATCTCCAGATGAAGATATCGAAT
TAGAAGAAGAGCGAAGTCAGCTAGCTAATTATGAAAAAATATTTATTGGGATGCAAAGTGCATACAATGCGCTGTACTCT
GACCAGAAAGCCCTGGAATGGTTAAATGAAGCGCAAATGGCGTTACAATCTATTCAGGATTACAATGACTTCATTCAGTC
TAAATCAAAGGATTTAACAAATCATTATTACAATATAGAGGAATTAGCATTTCAATTACGTGATCATCTAGATCAGATGC
AATATGATGAAGAACGATTAAATGAAATTGAAACAAGGCTTAGTGAGATTGATCGTCTAAAACGAAAATATGGTACCACC
GTAAATGAAATTTTGGATTATCAAAGTGAAATTGAAGAAGAAATTAATCAAATTCACAATAAAGATTCTCACTTAGCCTC
ACTAGAGCTAAAATTAAAAGAGAACAAGCTATCAGCATATGAGTTGGCTCTAGAACTACACCAATTGCGCAAAAAATCTG
CAGATGCTCTAACAAAGTCCATTCATAAAGAGTTAAAAGGATTGTATATGGAAAATGCGCAATTTTTTGTGGACATCGAA
AAACAGGCTAATAAATCTGTAGATATAGACAAAATTAATTTACATAAAAATGGCTTAGATCATGTGCAATTTAAAATTTC
AACCAATATTGGGGAACCATTAAAAGCATTGCATCGGATTGCCTCTGGTGGAGAATTATCAAGAATCATGTTAGTAATGA
AAACGATTTTTGCTAAACATCAAGGTGTAACAAGTGTCATATTTGATGAAGTAGATACAGGAGTAAGCGGAAGAGTTGCT
CAAGCAATGGCAGAAAAAATATATCGCATCTCAGAACAATCCCAAGTACTTTGTATTACTCATCTGCCACAGGTTGCAGC
GATGGCTGATGCACATATGCTAATCAAAAAACTTGAGAAAGATCAACGTACTTCAACAACAATTGAAGAACTTTCCGTTA
AAGAACGTGTCAATGAATTAAGCAGAATGATAACAGGTAAAAAAATTACCGATACAGCTAAAGAACATGGTAAAAAATTA
TTAGATTTAGCTAAACAATTTAAAAAAAATCTGGCAAAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.31

100

0.534

Multiple sequence alignment