Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   AW03_RS07960 Genome accession   NZ_CP007173
Coordinates   1518786..1519808 (+) Length   340 a.a.
NCBI ID   WP_015483198.1    Uniprot ID   -
Organism   Bacillus subtilis HJ5     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1513786..1524808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS07925 (AW03_015190) ylbE 1514086..1514325 (+) 240 WP_003232231.1 YlbE-like family protein -
  AW03_RS07930 (AW03_015200) ylbF 1514441..1514890 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  AW03_RS07935 (AW03_015210) ylbG 1514945..1515217 (+) 273 WP_009967171.1 YlbG family protein -
  AW03_RS07940 (AW03_015220) rsmD 1515540..1516094 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AW03_RS07945 (AW03_015230) coaD 1516099..1516584 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  AW03_RS07950 (AW03_015240) spoVV 1516595..1517821 (-) 1227 WP_015383588.1 dipicolinic acid transporter SpoVV -
  AW03_RS07955 (AW03_015250) ylbK 1518002..1518784 (+) 783 WP_015383589.1 patatin family protein -
  AW03_RS07960 (AW03_015260) sepM 1518786..1519808 (+) 1023 WP_015483198.1 protease DdcP Regulator
  AW03_RS22170 (AW03_015270) - 1519999..1520448 (-) 450 WP_015483199.1 hypothetical protein -
  AW03_RS07970 (AW03_015280) - 1520521..1521753 (-) 1233 WP_015383591.1 nucleotidyltransferase -
  AW03_RS07975 (AW03_015290) - 1521750..1521935 (-) 186 WP_003232215.1 hypothetical protein -
  AW03_RS07980 (AW03_015300) ylbN 1521963..1522481 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  AW03_RS21050 (AW03_015310) rpmF 1522503..1522682 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  AW03_RS07990 (AW03_015320) gerR 1522828..1523409 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  AW03_RS07995 (AW03_015330) ylbP 1523466..1523948 (-) 483 WP_014476736.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37551.11 Da        Isoelectric Point: 5.9932

>NTDB_id=102736 AW03_RS07960 WP_015483198.1 1518786..1519808(+) (sepM) [Bacillus subtilis HJ5]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSDMKI
VPVDTMQDAIDYLNKLKAKS

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=102736 AW03_RS07960 WP_015483198.1 1518786..1519808(+) (sepM) [Bacillus subtilis HJ5]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGTATTAAGGAGGAAGGCGAGTCAGATAAGGAATATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCACTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAGATATGAAGATT
GTTCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGTTAA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.403

Multiple sequence alignment