Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   AW03_RS07930 Genome accession   NZ_CP007173
Coordinates   1514441..1514890 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis HJ5     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1509441..1519890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS07890 (AW03_015120) ctaE 1509457..1510080 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  AW03_RS07895 (AW03_015130) ctaF 1510083..1510415 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  AW03_RS07900 (AW03_015140) ctaG 1510443..1511336 (+) 894 WP_015483193.1 cytochrome c oxidase assembly factor CtaG -
  AW03_RS07905 (AW03_015150) ylbA 1511368..1511730 (-) 363 WP_015383585.1 YugN family protein -
  AW03_RS07910 (AW03_015160) ylbB 1511870..1512316 (+) 447 WP_003221362.1 CBS domain-containing protein -
  AW03_RS07915 (AW03_015170) ylbC 1512400..1513440 (+) 1041 WP_015483195.1 CAP domain-containing protein -
  AW03_RS07920 (AW03_015180) ylbD 1513672..1514070 (+) 399 WP_003232233.1 YlbD family protein -
  AW03_RS07925 (AW03_015190) ylbE 1514086..1514325 (+) 240 WP_003232231.1 YlbE-like family protein -
  AW03_RS07930 (AW03_015200) ylbF 1514441..1514890 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  AW03_RS07935 (AW03_015210) ylbG 1514945..1515217 (+) 273 WP_009967171.1 YlbG family protein -
  AW03_RS07940 (AW03_015220) rsmD 1515540..1516094 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AW03_RS07945 (AW03_015230) coaD 1516099..1516584 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  AW03_RS07950 (AW03_015240) spoVV 1516595..1517821 (-) 1227 WP_015383588.1 dipicolinic acid transporter SpoVV -
  AW03_RS07955 (AW03_015250) ylbK 1518002..1518784 (+) 783 WP_015383589.1 patatin family protein -
  AW03_RS07960 (AW03_015260) sepM 1518786..1519808 (+) 1023 WP_015483198.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=102735 AW03_RS07930 WP_003221370.1 1514441..1514890(+) (ylbF) [Bacillus subtilis HJ5]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=102735 AW03_RS07930 WP_003221370.1 1514441..1514890(+) (ylbF) [Bacillus subtilis HJ5]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCTATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGTGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment