Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AB4P93_RS16305 Genome accession   NZ_CP162596
Coordinates   3417339..3418685 (+) Length   448 a.a.
NCBI ID   WP_210705166.1    Uniprot ID   -
Organism   Pseudomonas sp. B26140     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3412339..3423685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P93_RS16280 (AB4P93_16260) pgeF 3412554..3413276 (-) 723 WP_210705172.1 peptidoglycan editing factor PgeF -
  AB4P93_RS16285 (AB4P93_16265) rluD 3413273..3414235 (-) 963 WP_042561128.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB4P93_RS16290 (AB4P93_16270) - 3414387..3415403 (+) 1017 WP_042561129.1 outer membrane protein assembly factor BamD -
  AB4P93_RS16295 (AB4P93_16275) - 3415530..3415763 (+) 234 WP_042561130.1 PP0621 family protein -
  AB4P93_RS16300 (AB4P93_16280) pilS 3415753..3417342 (+) 1590 WP_232392536.1 PAS domain-containing sensor histidine kinase Regulator
  AB4P93_RS16305 (AB4P93_16285) pilR 3417339..3418685 (+) 1347 WP_210705166.1 sigma-54 dependent transcriptional regulator Regulator
  AB4P93_RS16310 (AB4P93_16290) thiO 3418815..3419915 (-) 1101 WP_210705164.1 glycine oxidase ThiO -
  AB4P93_RS16315 (AB4P93_16295) - 3419973..3420374 (-) 402 WP_047303296.1 type IV pilin protein -
  AB4P93_RS16320 (AB4P93_16300) - 3420390..3423479 (-) 3090 WP_210705163.1 pilus assembly protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50082.39 Da        Isoelectric Point: 6.3269

>NTDB_id=1027341 AB4P93_RS16305 WP_210705166.1 3417339..3418685(+) (pilR) [Pseudomonas sp. B26140]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLNSYSARNLGEAQALLQRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVSTALRMPAAGDASTSIDRRLLGDSPPMRNLRKQVDKLARSQA
PVYISGESGSGKELVARLIHEQGPRAGKPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAQGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIEVLA
AHMLQRLAKDTGQPAACLHLHALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGAIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=1027341 AB4P93_RS16305 WP_210705166.1 3417339..3418685(+) (pilR) [Pseudomonas sp. B26140]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCCGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCAACAGCTACAGCGCACGCAATCTGGGCGAGGCCCAGGCGCTGTTGCAGCGCGAGACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACGGGGCTGGAACTGGTGCAGCATATTCAGCAACGTTATCCACAACTGCCG
GTGGCGATGATTACCGCGTACGGCAGCCTGGAAACGGCAATCAATGCGTTGAAGGCGGGAGCTTTCGACTTTCTGACCAA
ACCGGTAGATCTCACCCGCCTGCGGGAATTGGTCTCCACAGCACTGCGCATGCCCGCCGCTGGCGACGCAAGCACCTCAA
TTGATCGACGCTTGCTGGGTGATTCGCCGCCGATGCGCAACCTGCGCAAACAAGTCGACAAACTCGCTCGCAGCCAGGCC
CCGGTGTACATCAGCGGTGAATCCGGCAGCGGCAAAGAGCTGGTCGCACGACTGATCCACGAACAAGGGCCTCGCGCCGG
CAAGCCGTTCGTGCCGGTGAACTGCGGGGCAATACCTTCGGAACTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCA
GTTTTACCGGCGCGGTCGAGGACAAACCGGGCCTGTTCCAGGCAGCACAGGGCGGGACATTGTTTCTCGATGAAGTGGCG
GACTTGCCACTGTCGATGCAGGTAAAGCTGCTGCGGGCGATTCAGGAAAAAGCCGTACGCAGTGTGGGCGGTCAGCAGGA
AACCGTGGTCGATGTGCGCATTCTCTGCGCGACGCACAAGGACCTCGACGCAGAAGTCGCCGCCGAACGCTTTCGTCAGG
ATCTTTATTACCGGCTAAACGTGATCGAATTGCGTGTGCCGCCCCTGCGCGAGCGACGGGATGACATTGAGGTGTTGGCG
GCGCACATGCTTCAGCGTCTGGCCAAAGACACCGGCCAACCAGCGGCATGCCTGCATCTGCACGCTTTGGAGGCTCTGAA
AAACTATCGGTTTCCGGGGAATGTGCGGGAACTGGAGAACGTGCTCGAACGGGCGCATACCTTGTGCGAGAACCGTACGA
TCGAGGCTGAAGATTTGCGCTTGAGCGAGGGCAACTGTGCGGCGGATGGCGCGATTGCCGATCTGACGCAGATCGACAAT
CTGGAGGATTATCTGGAGAACGTCGAACGTAAACTGATTTTGCAGGCGCTGGAGGAGACCCGCTGGAATCGGACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTCAGGTCGATGCGTTACAGACTGAAAAAACTCGGTCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.007

98.884

0.781
  pilR Acinetobacter baumannii strain A118

49.02

100

0.502

Multiple sequence alignment