Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AB4P95_RS26720 Genome accession   NZ_CP162583
Coordinates   5775628..5777217 (-) Length   529 a.a.
NCBI ID   WP_395598059.1    Uniprot ID   -
Organism   Pseudomonas sp. A1437     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5770628..5782217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P95_RS26705 (AB4P95_26665) - 5772596..5772997 (+) 402 WP_395598058.1 type IV pilin protein -
  AB4P95_RS26710 (AB4P95_26670) thiO 5773055..5774155 (+) 1101 WP_042561133.1 glycine oxidase ThiO -
  AB4P95_RS26715 (AB4P95_26675) pilR 5774285..5775631 (-) 1347 WP_042561132.1 sigma-54 dependent transcriptional regulator Regulator
  AB4P95_RS26720 (AB4P95_26680) pilS 5775628..5777217 (-) 1590 WP_395598059.1 sensor histidine kinase Regulator
  AB4P95_RS26725 (AB4P95_26685) - 5777207..5777440 (-) 234 WP_042561130.1 PP0621 family protein -
  AB4P95_RS26730 (AB4P95_26690) - 5777567..5778583 (-) 1017 WP_042561129.1 outer membrane protein assembly factor BamD -
  AB4P95_RS26735 (AB4P95_26695) rluD 5778735..5779697 (+) 963 WP_042561128.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB4P95_RS26740 (AB4P95_26700) pgeF 5779694..5780416 (+) 723 WP_395598060.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58599.43 Da        Isoelectric Point: 7.1983

>NTDB_id=1027221 AB4P95_RS26720 WP_395598059.1 5775628..5777217(-) (pilS) [Pseudomonas sp. A1437]
MIAEASHADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRNGSWLYLVLNILLVVFLENTRRPAQLF
SLALVDVLMLCGLFYAAGGVASALGNLLIVSVAISNTLLRRRIGLLIAAIGAIGIVGLSFLLSFSHPLSANEYLQAGTLG
ALCFAASLLVQGLVRRLEVSETLAEQTASKVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAQTLLAQSHLQGHLID
DYSTALVERLQLWLNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQIAQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLGESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVTESRMQATER
QKIHLRINSGDFATLMDPNQLTQILDNLLRNGWRHSAMLHDHAEVWLALFINPESQLAVLEVQDNGPGVPLDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFNPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1027221 AB4P95_RS26720 WP_395598059.1 5775628..5777217(-) (pilS) [Pseudomonas sp. A1437]
GTGATCGCTGAGGCCTCCCACGCCGACAGCAAACAGGCTCAGCGTCTGCTGCGCCTTTATCATCTTTACCGTTTAAGTGT
CGGCATCACCTTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCA
ACGGCAGCTGGCTGTATCTGGTGCTGAACATTTTGCTGGTGGTGTTCCTGGAGAACACCCGACGCCCCGCGCAATTGTTC
AGCCTGGCGCTGGTCGACGTTCTGATGCTGTGCGGCTTGTTCTACGCGGCTGGCGGCGTGGCCAGTGCGCTCGGCAACTT
GCTGATCGTTTCTGTGGCGATCAGCAATACCTTGCTGCGCCGCCGCATCGGTCTGCTGATCGCCGCCATCGGCGCCATCG
GCATTGTCGGTTTAAGCTTTCTGCTGAGTTTCAGCCATCCCCTGAGCGCCAACGAATACCTGCAGGCCGGCACCCTTGGC
GCGTTGTGTTTTGCCGCGTCGTTGCTGGTGCAGGGGCTGGTCCGGCGGCTGGAGGTCAGCGAAACCCTGGCCGAGCAAAC
CGCCAGCAAAGTGGTCGGTCTGGAGGCTCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGGATCCTGGTGCTCGACG
AACAACGCCGGGTACAGCTGGCCAATCACAGCGCGCAGACCCTGCTCGCGCAATCGCACCTTCAGGGCCATTTGATCGAC
GATTATTCGACCGCCCTGGTCGAACGCCTGCAACTGTGGCTGAACAACCCGACACTGCGCCCACAAAGTCTGAAAATCCC
CGGCAACGGCCTGGAACTGCAGCCAAGCTTCATCGCCCTCGAACAAAGCCCCAATCAGCAAACCCTCGTGTTTCTCGAAG
ACCTCGCGCAGATCGCTCAACAAGCCCAGCAACTGAAACTTGCCGCGCTCGGGCGTTTGACGGCCGGCATTTCCCACGAG
ATTCGCAATCCGCTGGGCGCCATCAGTCATGCCGCGCAGTTGTTGGGGGAGTCCGAGGAACTCGATAGCGCGGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTTATCGAAAACGTCCTGCAACTGTCCCGCCGTCAAC
AGAGCGCTCCACAACGGCTGGACCTCAAGCCGTGGCTGGAAAACTTCGTCACTGAGAGCCGCATGCAGGCTACCGAGCGG
CAGAAGATTCATCTGCGCATCAACTCGGGCGACTTCGCCACCCTGATGGATCCCAACCAGCTCACACAAATTCTCGACAA
TCTTTTACGCAACGGCTGGCGTCACAGCGCCATGCTGCATGATCACGCCGAGGTCTGGCTGGCCCTGTTCATAAACCCCG
AAAGCCAACTGGCGGTACTCGAGGTTCAGGACAACGGCCCCGGCGTACCGCTTGATCAGCAAGCGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAAGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTCAATCCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

100

0.601

Multiple sequence alignment