Detailed information NTG1027199

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AB4P95_RS00635
• Genome accession: NZ_CP162583
• Coordinates: 133815..136049 (+)
• Length: 744 a.a.
• NCBI ID: WP_395598258.1
• Uniprot ID: -
• Organism: Pseudomonas sp. A1437
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 128815..141049

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4P95_RS00610 (AB4P95_00605)	-	129835..130494 (+)	660	WP_395598256.1	transglutaminase family protein	-
AB4P95_RS00615 (AB4P95_00610)	-	130538..131161 (+)	624	WP_395598257.1	glutathione S-transferase family protein	-
AB4P95_RS00620 (AB4P95_00615)	-	131298..132230 (+)	933	WP_042560455.1	ABC transporter ATP-binding protein	-
AB4P95_RS00625 (AB4P95_00620)	-	132227..133006 (+)	780	WP_042560454.1	ABC transporter permease	-
AB4P95_RS00630 (AB4P95_00625)	-	133160..133678 (-)	519	WP_210622796.1	DUF2062 domain-containing protein	-
AB4P95_RS00635 (AB4P95_00630)	comA	133815..136049 (+)	2235	WP_395598258.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AB4P95_RS00640 (AB4P95_00635)	exbB	136151..136786 (+)	636	WP_042560451.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
AB4P95_RS00645 (AB4P95_00640)	-	136783..137211 (+)	429	WP_042560450.1	biopolymer transporter ExbD	-
AB4P95_RS00650 (AB4P95_00645)	lpxK	137211..138221 (+)	1011	WP_200616880.1	tetraacyldisaccharide 4'-kinase	-
AB4P95_RS00655 (AB4P95_00650)	-	138244..138429 (+)	186	WP_003174668.1	Trm112 family protein	-
AB4P95_RS00660 (AB4P95_00655)	kdsB	138426..139190 (+)	765	WP_042560448.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AB4P95_RS00665 (AB4P95_00660)	-	139190..139654 (+)	465	WP_047302609.1	low molecular weight protein-tyrosine-phosphatase	-
AB4P95_RS00670 (AB4P95_00665)	murB	139651..140670 (+)	1020	WP_395598259.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81840.09 Da
• Isoelectric Point: 10.0782

>NTDB_id=1027199 AB4P95_RS00635 WP_395598258.1 133815..136049(+) (comA) [Pseudomonas sp. A1437]
MRTGMMALAVGLLAPIFMPALPPVWLMVLLAVVALMLLPFRSYPLAFLLFGFTWACVSAHWALQDRLPVALDGETRWLEG
RVVGLPQNSDGVVRFELADAHSRHGKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKEGQRLGEARWAWRDSIRQRLLAVDAQGRGGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGMLAAVMYLL
VAGLARYGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANFLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDWLFRGLALIAGQWPAWIAPSLPGWALAIGSLGAALLLLPRGVPLRPLGWPLLLILV
MPPRERLDAGLADVWQLDVGQGLAILIRTRHHALLYDAGPRFRDFDLGERVVLPALRKLNVETLDLMLLSHADADHAGGA
LAVARRLQVKQVISGDPPGLPAELNAQACESGRQWQWDGVSFQLWQWADAQDSNQRSCVLQIEANGERLLLTGDIDKQAE
RVLLQGPLNVPTQWLQAPHHGSRSSSSMALLKALKPDAVLISRGQGNSFGHPHPTVIARYRQQGLRIYDSAEHGAIHLQL
GAFKPPWTMRQYPRFWREPPLSSH

Nucleotide

• Length: 2235 bp

>NTDB_id=1027199 AB4P95_RS00635 WP_395598258.1 133815..136049(+) (comA) [Pseudomonas sp. A1437]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTTTGCTTGCTCCGATATTTATGCCGGCCTTACCGCCGGTCTGGTTGAT
GGTGTTGCTGGCGGTCGTGGCTTTGATGTTGCTGCCGTTTCGCAGCTATCCATTGGCTTTTCTGCTTTTTGGTTTCACCT
GGGCTTGCGTCAGCGCGCATTGGGCGTTGCAGGATCGCTTGCCGGTGGCGCTGGATGGCGAGACCCGTTGGCTCGAAGGG
CGCGTGGTCGGGTTGCCGCAAAACAGCGACGGCGTGGTTCGTTTCGAGTTGGCGGATGCCCATTCGCGCCACGGCAAACT
GCCGTCACTGATGCGCCTGGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAGCGCTGGCGCCTGGCGGTCAAGCTCA
AGCGCCCGGGCGGGTTGCTCAATCCGGACGCCTTTGATTACGAAGCCTGGCTACTCGCCCAACGCATTGGCGCAACGGGC
ACGGTCAAGGAGGGTCAGCGCCTTGGCGAGGCGCGATGGGCGTGGCGCGACAGCATTCGTCAGCGCTTGCTGGCGGTCGA
CGCGCAGGGCCGGGGAGGGGCGCTGGCGGCGCTGGTGCTCGGCGATGGCTCGGGCCTGAGTCGCGAGGATTGGCAGACTC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATTTCCGGCCAGCACATCGGCATGCTGGCGGCGGTGATGTACTTGCTG
GTCGCCGGGCTGGCCCGATATGGTCTGTGGCCGCTGCGTTGGCCGTGGCTGCCTTGGGCCTGTGGCCTGGCCTTTGCCGC
GGCACTCGGTTACGGCTTGCTCGCCGGATTTGATGTGCCGGTGCAAAGGGCCTGCGTGATGGTCGGGCTGGTGCTGTTGT
GGCGCCTGCGCTTTCGTCATCTCGGCGCCTGGTGGCCACTGTTGCTGGCGTTTAATGGCGTGCTGTTGCTGGATCCGCTG
GCTAGTCTGCGCCCCGGCCTCTGGTTGTCATTTGCGGCGGTGGCGGTGCTGATCTTCACCTTTGGCGGGCGCCTTGGGGC
ATGGCGCTGGTGGCAGACCTGGACGCGAGCGCAGTGGTTGATCGCGATCGGCCTCTGCCCGGTGTTGTTGGCGCTGAATC
TGCCGATCAGCCTCAGTGGGCCGTTGGCAAATTTCCTGGCGGTTCCTTGGGTCAGTCTGGTGGTGCTGCCCCCGGCATTG
CTCGGGACTCTGTTGTTGCCAGTGCCGTATGTCGGCGAAGGGCTGTTGTGGCTGGCGGGTGGTTTGATCGACTGGCTGTT
CCGCGGCCTGGCGCTGATCGCCGGGCAGTGGCCGGCGTGGATTGCGCCGTCGCTTCCCGGTTGGGCGTTGGCTATCGGCA
GTCTCGGTGCGGCGCTGTTGCTGTTGCCGCGAGGGGTACCGCTGCGTCCCTTGGGCTGGCCATTGTTGTTGATTCTGGTC
ATGCCACCCCGGGAGCGGCTGGACGCCGGACTGGCCGATGTCTGGCAACTCGATGTCGGCCAGGGCCTGGCGATTCTGAT
CCGTACTCGTCATCACGCGCTGCTCTACGATGCCGGGCCGCGGTTCCGCGATTTCGATCTTGGCGAACGTGTTGTCTTGC
CGGCCCTGCGCAAATTGAATGTCGAGACACTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGTGGTGCT
TTGGCCGTTGCGCGCCGTTTGCAGGTGAAGCAAGTCATCAGCGGCGATCCGCCGGGGCTGCCAGCCGAACTGAACGCGCA
GGCGTGTGAAAGTGGCCGGCAATGGCAGTGGGACGGTGTCAGTTTTCAACTCTGGCAATGGGCGGACGCTCAGGACAGCA
ATCAGCGCTCCTGCGTGTTGCAGATCGAGGCCAATGGTGAGCGCCTGCTGCTGACCGGCGATATTGATAAACAGGCCGAG
CGAGTCTTGCTGCAAGGCCCTCTGAACGTGCCTACTCAATGGTTGCAAGCCCCGCACCACGGCAGCCGCAGTTCATCATC
GATGGCATTGCTCAAAGCGTTGAAACCCGATGCCGTTTTGATATCCCGTGGTCAGGGCAACTCGTTCGGTCATCCGCATC
CGACCGTCATTGCGCGTTATCGCCAGCAAGGGTTGCGTATTTACGACAGTGCCGAGCACGGTGCCATTCATCTGCAACTT
GGGGCGTTCAAACCACCGTGGACAATGCGCCAGTACCCGCGTTTCTGGCGTGAACCGCCGCTGTCCTCCCATTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.827	96.237	0.614
comA	Ralstonia pseudosolanacearum GMI1000	34.129	100	0.384