Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB3N04_RS17285 Genome accession   NZ_CP162551
Coordinates   3123650..3125374 (+) Length   574 a.a.
NCBI ID   WP_368503862.1    Uniprot ID   A0AB39BR35
Organism   Alkalihalophilus sp. As8PL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3118650..3130374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N04_RS17265 (AB3N04_17265) - 3119715..3120311 (+) 597 WP_368503858.1 hypothetical protein -
  AB3N04_RS17270 (AB3N04_17270) dxs 3120333..3122222 (+) 1890 WP_368503859.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AB3N04_RS17275 (AB3N04_17275) - 3122228..3123040 (+) 813 WP_368503860.1 TlyA family RNA methyltransferase -
  AB3N04_RS17280 (AB3N04_17280) argR 3123184..3123633 (+) 450 WP_368503861.1 transcriptional regulator ArgR -
  AB3N04_RS17285 (AB3N04_17285) recN 3123650..3125374 (+) 1725 WP_368503862.1 DNA repair protein RecN Machinery gene
  AB3N04_RS17290 (AB3N04_17290) spoIVB 3125511..3126821 (+) 1311 WP_368503863.1 SpoIVB peptidase -
  AB3N04_RS17295 (AB3N04_17295) spo0A 3127100..3127897 (+) 798 WP_368503864.1 sporulation transcription factor Spo0A -
  AB3N04_RS17300 (AB3N04_17300) steA 3128029..3129153 (+) 1125 WP_368503865.1 putative cytokinetic ring protein SteA -
  AB3N04_RS17305 (AB3N04_17305) - 3129146..3129811 (+) 666 WP_368503866.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64731.06 Da        Isoelectric Point: 5.0920

>NTDB_id=1027095 AB3N04_RS17285 WP_368503862.1 3123650..3125374(+) (recN) [Alkalihalophilus sp. As8PL]
MLIELSIKHFAIIDELTIPFEKGLTVLTGETGAGKSIIIDAIGLLLGGRGSAEFVRHGEKRAEIEGLFSIERRHPIVKKA
IELGIDVQDDMFVLRRDITAQGKSICRVNGKLVTLGILREIGSALVDIHGQHEHQALLQAEHHLGMLDSYAKVPLGNTMT
EYKQLYERANQLEKQVKHLSHNEQEMAQRIDLLTYQLNEINEAKLEPDEDRSLAEERFKLANSEKLFQSLKDSYANLYGD
GKGLDYLMNAMMHLEEAASVDKNLQSLHETISSCYYVIEESTYAIRDQVDSVEFDPNRLDFIEARLNDIQLLKRKYGEDV
EEILEYASKIEEELDTILHKDDRVLQLQKELDMAWRDLYVEAKAITNIRKKAAEKLTKAIHKELKALYMEKTVMEIRIED
RTPTKNSPMIDGKSVSFGLDGIDQVEFYISTNPGEPMKPLSKTASGGEVSRIMLALKSIFQSHQQITSVIFDEVDTGVSG
RVAQAIAERIHSIAVGSQVLCITHLPQVAAMADTHLYIAKFEKSDRVKTSVTPLEVDQKVDELARMISGVEVTDLTKQHA
KELLELAEQLKEPV

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=1027095 AB3N04_RS17285 WP_368503862.1 3123650..3125374(+) (recN) [Alkalihalophilus sp. As8PL]
ATGTTAATTGAATTATCAATCAAACATTTTGCAATCATTGATGAATTAACAATTCCCTTTGAAAAAGGCTTAACTGTATT
GACCGGTGAGACGGGAGCTGGAAAGTCAATCATCATTGATGCAATTGGATTATTACTTGGAGGTCGTGGCTCAGCGGAAT
TTGTTCGTCATGGAGAAAAGCGGGCAGAGATTGAAGGGCTTTTCAGTATTGAAAGAAGGCATCCTATTGTAAAGAAAGCA
ATAGAATTAGGTATTGACGTTCAAGATGACATGTTTGTACTCCGGCGTGATATTACAGCTCAGGGTAAAAGTATCTGTAG
AGTGAACGGAAAATTGGTTACACTTGGTATATTAAGAGAAATAGGTAGTGCTCTTGTTGATATTCATGGACAACATGAAC
ATCAAGCTCTTCTTCAAGCTGAGCACCATCTGGGCATGCTCGATAGTTATGCAAAAGTTCCGTTAGGAAATACAATGACG
GAATATAAGCAGCTGTATGAGCGGGCTAATCAATTAGAAAAGCAAGTTAAACACCTAAGCCATAATGAACAAGAGATGGC
ACAAAGAATTGATTTGCTTACATATCAATTAAATGAAATTAATGAAGCTAAACTTGAACCTGATGAGGATCGTTCTTTAG
CAGAGGAACGATTTAAGCTAGCTAATAGTGAAAAGCTTTTTCAATCACTAAAGGATAGTTATGCCAATTTATATGGGGAT
GGAAAAGGATTAGATTATTTAATGAATGCGATGATGCATCTTGAAGAAGCTGCATCTGTTGATAAAAACTTACAATCCTT
ACATGAAACGATAAGTAGCTGTTATTATGTAATTGAAGAATCTACATATGCGATTCGTGATCAAGTGGATAGCGTTGAAT
TTGATCCAAACCGTCTAGATTTTATTGAAGCTCGTTTAAACGACATTCAACTTTTAAAGAGAAAATACGGGGAAGATGTT
GAAGAAATATTAGAGTATGCATCTAAGATCGAAGAGGAGCTTGATACCATCCTTCATAAAGATGATCGAGTCCTACAATT
ACAAAAAGAACTTGATATGGCATGGCGTGATCTATATGTAGAAGCTAAAGCTATTACGAATATACGAAAGAAAGCTGCAG
AAAAGCTGACAAAAGCCATTCATAAGGAACTAAAAGCGCTGTATATGGAAAAAACAGTGATGGAAATTCGAATAGAAGAT
CGTACTCCCACTAAAAATAGCCCGATGATTGATGGCAAGTCAGTCTCGTTTGGTCTCGATGGAATCGATCAAGTTGAATT
TTACATCTCTACAAACCCTGGCGAGCCTATGAAGCCACTTTCAAAAACAGCTTCTGGAGGAGAAGTTTCAAGAATTATGC
TTGCTCTAAAGTCTATTTTTCAAAGTCATCAACAAATTACTTCTGTTATTTTTGATGAAGTGGATACAGGGGTTAGTGGG
CGAGTCGCACAAGCAATTGCAGAACGAATTCACTCAATTGCAGTAGGATCTCAAGTACTCTGTATTACACACCTACCTCA
AGTAGCAGCCATGGCAGATACTCATTTATACATTGCTAAATTTGAAAAAAGTGATCGTGTAAAAACATCTGTAACTCCAC
TTGAAGTAGATCAAAAAGTGGATGAATTAGCTCGAATGATATCAGGCGTTGAGGTGACTGATTTAACAAAACAACATGCA
AAAGAGTTACTTGAACTTGCAGAACAACTAAAGGAACCAGTATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

57.417

99.826

0.573

Multiple sequence alignment