Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AW03_RS04960 Genome accession   NZ_CP007173
Coordinates   961649..962296 (+) Length   215 a.a.
NCBI ID   WP_015383201.1    Uniprot ID   -
Organism   Bacillus subtilis HJ5     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 956649..967296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS04945 (AW03_009260) glpD 956822..958489 (+) 1668 WP_015383198.1 glycerol-3-phosphate dehydrogenase -
  AW03_RS04950 (AW03_009270) pgcA 958619..960364 (+) 1746 WP_015383199.1 phosphoglucomutase -
  AW03_RS04955 (AW03_009280) yhcY 960513..961652 (+) 1140 WP_015483003.1 two-component system sensor histidine kinase YhcY -
  AW03_RS04960 (AW03_009290) vraR 961649..962296 (+) 648 WP_015383201.1 two-component system response regulator YhcZ Regulator
  AW03_RS04965 (AW03_009300) yhdA 962293..962817 (+) 525 WP_015483004.1 FMN-dependent NADPH-azoreductase -
  AW03_RS04970 (AW03_009310) yhdB 962832..963074 (-) 243 WP_015483005.1 YhdB family protein -
  AW03_RS04975 (AW03_009320) yhdC 963275..963598 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  AW03_RS04980 (AW03_009330) lytF 963640..965106 (-) 1467 WP_015483006.1 peptidoglycan endopeptidase LytF -
  AW03_RS04985 (AW03_009340) nsrR 965259..965699 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -
  AW03_RS20595 (AW03_009350) - 965904..967256 (+) 1353 WP_015483356.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24191.86 Da        Isoelectric Point: 6.5033

>NTDB_id=102706 AW03_RS04960 WP_015383201.1 961649..962296(+) (vraR) [Bacillus subtilis HJ5]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPETNIIVL
TSYSDQEHVIPALRAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=102706 AW03_RS04960 WP_015383201.1 961649..962296(+) (vraR) [Bacillus subtilis HJ5]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTTGTCGGAGAAGCTGCAACCGGATTAGAAGCACTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTCCCGGAGACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCGGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCGAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCTGATCGTACGCAAGCAGCGCTTTTCGCAGTGAAATATAACCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

38.053

100

0.4

Multiple sequence alignment