Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   AB3473_RS08900 Genome accession   NZ_CP162537
Coordinates   1849228..1849791 (-) Length   187 a.a.
NCBI ID   WP_398573935.1    Uniprot ID   -
Organism   Staphylococcus equorum strain UPB 1351     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1844228..1854791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3473_RS08860 (AB3473_08860) - 1844508..1845065 (-) 558 WP_002508059.1 GNAT family N-acetyltransferase -
  AB3473_RS08865 (AB3473_08865) - 1845240..1845452 (+) 213 WP_046465163.1 TM2 domain-containing protein -
  AB3473_RS08870 (AB3473_08870) - 1845803..1846057 (-) 255 WP_021339514.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  AB3473_RS08875 (AB3473_08875) arsC 1846530..1846925 (-) 396 WP_021339513.1 arsenate reductase (thioredoxin) -
  AB3473_RS08880 (AB3473_08880) arsB 1846943..1848235 (-) 1293 WP_021339512.1 arsenite efflux transporter membrane subunit ArsB -
  AB3473_RS08885 (AB3473_08885) - 1848235..1848549 (-) 315 WP_398573934.1 ArsR/SmtB family transcription factor -
  AB3473_RS08900 (AB3473_08900) comK/comK1 1849228..1849791 (-) 564 WP_398573935.1 competence protein ComK Regulator
  AB3473_RS08905 (AB3473_08905) - 1850044..1850262 (+) 219 WP_002508071.1 IDEAL domain-containing protein -
  AB3473_RS08910 (AB3473_08910) - 1850362..1851351 (-) 990 WP_002508072.1 lipoate--protein ligase -
  AB3473_RS08915 (AB3473_08915) - 1851552..1851737 (+) 186 WP_002508073.1 DUF2187 family protein -
  AB3473_RS08920 (AB3473_08920) - 1851744..1852346 (+) 603 WP_002508074.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  AB3473_RS08925 (AB3473_08925) - 1852608..1854116 (-) 1509 WP_021339510.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22056.54 Da        Isoelectric Point: 9.5845

>NTDB_id=1027032 AB3473_RS08900 WP_398573935.1 1849228..1849791(-) (comK/comK1) [Staphylococcus equorum strain UPB 1351]
MIQQYIIKKGDMALQPCNLSIGLNEGTCVLKYKEERDIVKERTHKIINRSCRFYGSSYVFKKKDTMRITGINSKPPILFT
PLFPTYFFPTHSDRKEENTWINIHYVQTIRALKDKKCKITFVDNQTIVVNISAHSMHHQYLNGIYYYYMMDRAARVATFD
PESPIDYTKPQLNIYEALAKYSLFENK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=1027032 AB3473_RS08900 WP_398573935.1 1849228..1849791(-) (comK/comK1) [Staphylococcus equorum strain UPB 1351]
ATGATTCAACAATACATTATTAAAAAAGGTGATATGGCTCTTCAACCTTGTAATTTATCTATAGGACTAAATGAAGGTAC
TTGTGTATTAAAGTATAAGGAGGAGCGTGATATTGTAAAGGAACGGACACATAAGATTATAAATCGTTCATGTAGATTTT
ATGGTAGCAGTTATGTATTTAAAAAAAAAGACACAATGAGAATTACAGGTATTAATAGTAAACCCCCGATATTATTCACT
CCATTATTTCCTACTTATTTTTTTCCTACACATTCAGACCGAAAAGAAGAAAACACTTGGATCAATATTCATTATGTACA
AACCATAAGAGCTTTAAAAGATAAAAAATGTAAAATCACATTTGTCGATAACCAGACTATAGTTGTTAATATTTCAGCAC
ACAGTATGCATCATCAATACTTAAATGGTATATATTATTACTATATGATGGATAGAGCAGCTAGGGTGGCTACTTTTGAT
CCTGAATCTCCTATAGACTATACGAAACCACAATTAAATATTTATGAAGCATTAGCAAAATATTCTCTATTTGAAAATAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(3-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

51.913

97.861

0.508
  comK/comK1 Staphylococcus aureus N315

51.913

97.861

0.508

Multiple sequence alignment