Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB3473_RS04115 | Genome accession | NZ_CP162537 |
| Coordinates | 874731..875150 (+) | Length | 139 a.a. |
| NCBI ID | WP_002507087.1 | Uniprot ID | A0A1E5TFZ6 |
| Organism | Staphylococcus equorum strain UPB 1351 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 869731..880150
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3473_RS04085 (AB3473_04085) | atpD | 869769..871181 (+) | 1413 | WP_002507081.1 | F0F1 ATP synthase subunit beta | - |
| AB3473_RS04090 (AB3473_04090) | - | 871201..871605 (+) | 405 | WP_002507082.1 | F0F1 ATP synthase subunit epsilon | - |
| AB3473_RS04095 (AB3473_04095) | - | 871928..872161 (+) | 234 | WP_002507083.1 | DUF1146 family protein | - |
| AB3473_RS04100 (AB3473_04100) | murA | 872268..873533 (+) | 1266 | WP_002507084.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| AB3473_RS04105 (AB3473_04105) | fabZ | 873591..874031 (+) | 441 | WP_002507085.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| AB3473_RS04110 (AB3473_04110) | - | 874100..874540 (-) | 441 | WP_002507086.1 | YwpF-like family protein | - |
| AB3473_RS04115 (AB3473_04115) | ssb | 874731..875150 (+) | 420 | WP_002507087.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3473_RS04120 (AB3473_04120) | - | 875634..876275 (+) | 642 | WP_398574318.1 | transglycosylase family protein | - |
| AB3473_RS04125 (AB3473_04125) | tenA | 876668..877357 (+) | 690 | WP_398574319.1 | thiaminase II | - |
| AB3473_RS04130 (AB3473_04130) | thiD | 877350..878171 (+) | 822 | WP_002507090.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| AB3473_RS04135 (AB3473_04135) | thiM | 878164..878955 (+) | 792 | WP_069819326.1 | hydroxyethylthiazole kinase | - |
| AB3473_RS04140 (AB3473_04140) | thiE | 878955..879593 (+) | 639 | WP_002507092.1 | thiamine phosphate synthase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 16259.49 Da Isoelectric Point: 4.8624
>NTDB_id=1027014 AB3473_RS04115 WP_002507087.1 874731..875150(+) (ssb) [Staphylococcus equorum strain UPB 1351]
MINNIVIVGRLTKDPKIYEKEGKKLATFCVAVNRNYKDKDQNTVCDYLYCKAFGKIADNIEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSELYIETIKFMSPRTKNETDELFEPFPLEQDHESFNEINIQENDIYEIV
MINNIVIVGRLTKDPKIYEKEGKKLATFCVAVNRNYKDKDQNTVCDYLYCKAFGKIADNIEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSELYIETIKFMSPRTKNETDELFEPFPLEQDHESFNEINIQENDIYEIV
Nucleotide
Download Length: 420 bp
>NTDB_id=1027014 AB3473_RS04115 WP_002507087.1 874731..875150(+) (ssb) [Staphylococcus equorum strain UPB 1351]
ATGATAAATAACATCGTCATTGTAGGACGATTAACAAAAGATCCCAAAATTTACGAAAAGGAGGGGAAGAAGTTAGCTAC
CTTTTGTGTAGCAGTAAATAGAAATTATAAAGATAAAGATCAAAATACAGTCTGTGATTATTTGTATTGTAAAGCATTTG
GTAAAATTGCTGACAATATTGAAAAGTATATCAATCAAGGATCACTTGTAGGTATTACTGGACAAATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAACTTTATATCGAAACAATTAAATTCATGTCTCCACGAACTAAAAA
TGAAACGGATGAACTTTTTGAACCATTCCCATTAGAGCAAGATCATGAATCATTCAACGAAATTAATATTCAAGAAAATG
ATATATACGAAATTGTATAA
ATGATAAATAACATCGTCATTGTAGGACGATTAACAAAAGATCCCAAAATTTACGAAAAGGAGGGGAAGAAGTTAGCTAC
CTTTTGTGTAGCAGTAAATAGAAATTATAAAGATAAAGATCAAAATACAGTCTGTGATTATTTGTATTGTAAAGCATTTG
GTAAAATTGCTGACAATATTGAAAAGTATATCAATCAAGGATCACTTGTAGGTATTACTGGACAAATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAACTTTATATCGAAACAATTAAATTCATGTCTCCACGAACTAAAAA
TGAAACGGATGAACTTTTTGAACCATTCCCATTAGAGCAAGATCATGAATCATTCAACGAAATTAATATTCAAGAAAATG
ATATATACGAAATTGTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Staphylococcus aureus N315 |
61.594 |
99.281 |
0.612 |
| ssb | Staphylococcus aureus MW2 |
60.87 |
99.281 |
0.604 |