Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   AB3470_RS20420 Genome accession   NZ_CP162517
Coordinates   3858907..3859026 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain BF12B1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3853907..3864026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3470_RS20395 (AB3470_20385) albG 3854071..3854772 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  AB3470_RS20400 (AB3470_20390) ywhL 3854778..3856154 (-) 1377 WP_110109508.1 YncE family protein -
  AB3470_RS20405 (AB3470_20395) ywhK 3856193..3857548 (-) 1356 WP_015250986.1 YncE family protein -
  AB3470_RS20410 (AB3470_20400) - 3857545..3857775 (-) 231 WP_024572000.1 hypothetical protein -
  AB3470_RS20415 (AB3470_20405) rapF 3857778..3858923 (+) 1146 WP_113712952.1 response regulator aspartate phosphatase RapF Regulator
  AB3470_RS20420 (AB3470_20410) phrF 3858907..3859026 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  AB3470_RS20425 (AB3470_20415) - 3859283..3859762 (+) 480 WP_015714892.1 hypothetical protein -
  AB3470_RS20430 (AB3470_20420) - 3859911..3860699 (+) 789 WP_015714893.1 membrane protein -
  AB3470_RS20435 (AB3470_20425) - 3860722..3861360 (+) 639 WP_198421573.1 hypothetical protein -
  AB3470_RS20440 (AB3470_20430) - 3861370..3862167 (+) 798 WP_231573542.1 hypothetical protein -
  AB3470_RS20445 (AB3470_20435) - 3862170..3862817 (+) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  AB3470_RS20450 (AB3470_20440) - 3862810..3863370 (+) 561 WP_029726083.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=1026808 AB3470_RS20420 WP_009968329.1 3858907..3859026(+) (phrF) [Bacillus subtilis strain BF12B1]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1026808 AB3470_RS20420 WP_009968329.1 3858907..3859026(+) (phrF) [Bacillus subtilis strain BF12B1]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment