Detailed information NTG1026688

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB4K07_RS17210
• Genome accession: NZ_CP162509
• Coordinates: 3819861..3820730 (+)
• Length: 289 a.a.
• NCBI ID: WP_045190406.1
• Uniprot ID: A0AB39AZI0
• Organism: Pseudomonas sp. Hg3Tf
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3814861..3825730

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4K07_RS17180 (AB4K07_17180)	-	3815435..3815644 (-)	210	WP_125921985.1	AlpA family transcriptional regulator	-
AB4K07_RS17185 (AB4K07_17185)	-	3815759..3816481 (-)	723	WP_280043256.1	hypothetical protein	-
AB4K07_RS17190 (AB4K07_17190)	-	3816478..3817695 (-)	1218	WP_368491618.1	tyrosine-type recombinase/integrase	-
AB4K07_RS17200 (AB4K07_17200)	-	3818000..3818428 (-)	429	WP_274072112.1	pilin	-
AB4K07_RS17205 (AB4K07_17205)	-	3818650..3819858 (+)	1209	WP_045190407.1	type II secretion system F family protein	-
AB4K07_RS17210 (AB4K07_17210)	pilD	3819861..3820730 (+)	870	WP_045190406.1	A24 family peptidase	Machinery gene
AB4K07_RS17215 (AB4K07_17215)	coaE	3820730..3821353 (+)	624	WP_101291922.1	dephospho-CoA kinase	-
AB4K07_RS17220 (AB4K07_17220)	yacG	3821350..3821556 (+)	207	WP_045190404.1	DNA gyrase inhibitor YacG	-
AB4K07_RS17225 (AB4K07_17225)	-	3821560..3822249 (-)	690	WP_045190403.1	energy-coupling factor ABC transporter permease	-
AB4K07_RS17230 (AB4K07_17230)	-	3822362..3822991 (+)	630	WP_045190402.1	DUF1780 domain-containing protein	-
AB4K07_RS17235 (AB4K07_17235)	-	3823160..3823333 (+)	174	WP_036989987.1	DUF3094 family protein	-
AB4K07_RS17240 (AB4K07_17240)	-	3823418..3824713 (+)	1296	WP_045190401.1	NAD(P)/FAD-dependent oxidoreductase	-
AB4K07_RS17245 (AB4K07_17245)	-	3824880..3825218 (-)	339	WP_045190400.1	hypothetical protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31827.14 Da
• Isoelectric Point: 7.9444

>NTDB_id=1026688 AB4K07_RS17210 WP_045190406.1 3819861..3820730(+) (pilD) [Pseudomonas sp. Hg3Tf]
MDLMDTLASQPLLYLGFALLLGLVVGSFLNVLVHRLPIMLQRQWQVEAREVLDLPEEATPERYNLCLPASQCPQCGHRIR
PWENIPVVSYLLLRGRCSRCRSAISVRYPLVELGCAALTVFVAWQLGASSSTVVVLLFSWGLLAMSLIDIEHRLLPDVLV
LPLLWLGLIVNAFGLLVPLEDALWGAVVGYLSLWSMFWLFKLITGKEGMGYGDFKLLALIGAWGGWQVLPLTLLLSSVLG
AVIGLIMLRVKGLKASTPIPFGPYLAIAGWIALLWGGQITTSYLKFSGL

Nucleotide

• Length: 870 bp

>NTDB_id=1026688 AB4K07_RS17210 WP_045190406.1 3819861..3820730(+) (pilD) [Pseudomonas sp. Hg3Tf]
ATGGACCTGATGGATACGCTGGCCAGCCAGCCGCTGCTGTACCTGGGTTTTGCCCTGCTGCTGGGGCTGGTCGTCGGCAG
TTTTCTCAACGTGCTGGTGCATCGTTTGCCGATCATGCTGCAACGCCAGTGGCAGGTGGAAGCGCGGGAGGTGCTCGACC
TGCCCGAAGAAGCCACGCCTGAGCGTTACAACCTGTGCCTGCCCGCTTCACAGTGCCCGCAGTGCGGGCATCGTATTCGC
CCCTGGGAGAACATCCCGGTAGTGAGTTACCTGTTGTTGCGTGGGCGCTGTTCCCGTTGCCGCAGCGCCATCAGCGTGCG
CTATCCGTTGGTAGAACTGGGCTGCGCAGCGCTGACGGTGTTTGTCGCCTGGCAACTGGGGGCCAGCAGCAGTACGGTCG
TCGTGCTGTTGTTCAGTTGGGGCTTGCTGGCCATGAGCCTGATCGACATCGAGCACCGGCTGTTACCCGATGTGCTGGTG
CTGCCGCTGTTGTGGCTGGGGCTTATCGTCAATGCCTTCGGGTTGCTGGTGCCGCTTGAGGATGCGCTGTGGGGCGCGGT
TGTCGGCTATTTGAGCCTGTGGTCGATGTTCTGGCTGTTCAAGCTCATCACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGTTGCTGGCGCTGATCGGCGCCTGGGGCGGTTGGCAGGTTCTGCCGCTGACGCTGCTGTTGTCGTCGGTGCTGGGG
GCGGTGATCGGGCTGATTATGCTGCGGGTTAAAGGCCTCAAGGCCAGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
CGCGGGCTGGATCGCTCTGCTCTGGGGTGGTCAAATAACCACTTCTTACCTGAAATTCTCTGGATTGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	49.65	98.962	0.491
pilD	Vibrio cholerae strain A1552	49.648	98.27	0.488
pilD	Acinetobacter baumannii D1279779	47.81	94.81	0.453
pilD	Acinetobacter nosocomialis M2	47.08	94.81	0.446
pilD	Neisseria gonorrhoeae MS11	49.02	88.235	0.433